Etheostoma cragini (Arkansas darter): 117957073
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Entry
117957073 CDS
T07493
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117957073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117957073
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117957073
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117957073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117957073
NCBI-ProteinID:
XP_034748507
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All DBs
Position
14:22048419..22078559
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AA seq
950 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKNQKRIYCQLHNAANANQKEKYEADLKKEI
KKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQ
KVDPAQKEKEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEDRIEELKTFIE
KHRHHIRMLETILRMLDNDSIQVDAIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEEI
PQALIATSPPGNSNLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDS
EVGQSPVKNGNPSSSLSSSSSSSSSSSSSSSCSSSSSIPGLTSSSLVSMATITGGGLSGS
GGLHGSLGGLLSNTSAGSYSSATQQQPHPSAQQQQQQAKNLVGPVSSAPISIPNSSTNSH
LMSSAPSPPNAITQGLFTSSSQAQALSGPTPTSNSLGLSLGLSLGKGGMSGCITTSPMSG
SLGLSGMPASLSSMASLLSGSTPAPYAQAAASGAIGSGLPGSLGGIGINPTTTHSTVGSI
GSGSITVGGPTSSTGGLLGPAPGLTNVGSGMLGLGSGQSGMQGSSLVSLSPVGGLAPGSG
VGVIGSNGGSSGSAGSGVVGGNLSLSVRPPSQQKQNGSTSYSAVVADSTTDSALTSASQS
QSSQSSSLTSPANQPKDTGSSLLGSICMSSSSPSPAFYSEAKAVSGGSLLNGPLSYSQSS
DSMKPQEPLSSLKSMAERAALSSGMEGDVSSLHLTPVSVSCLPSDIFPSSTTVPSGPPSA
PQLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPC
PTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYM
MWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtcgaacagtttgaagacatttggcaaaagaatcagaaaaggatttattgccaactt
cacaatgcagccaacgcgaaccagaaagagaaatatgaagcggacctcaagaaagagatt
aaaaagctccagcgtcttcgagaccagatcaagacgtgggtggcatccaacgagatcaaa
gacaaaaggcagctagtagagaaccgcaaactcatagaaacgcaaatggagcggttcaaa
atagtggagagagaaaccaagacgaaggcgtactctaaagaaggtttgggtctggcccag
aaggtggacccggcccagaaggagaaggaggaggtcggcacgtggctaacgaacacgatc
gacacgttgaacatgcaggtggaccagtttgagagcgaggtggagtctctttcagtgcag
acgaggaaaaagaaaggagacaaagaggaccggattgaggagctgaagacatttattgaa
aagcatcggcaccacatccggatgctggagaccatactgaggatgctggacaacgactcc
atacaggtggacgccatcaggaagatcaaggatgatgtggagtattatctagactcgtcg
caggatccagactttgaggagaatgagtttctgtacgacgacctggacctggaagaaatt
cctcaggcgctgattgccacatccccgccaggaaactccaacttggaggacgagatcttc
cagaactccagcagcacgcccacctccaccacctcatcttcacccatccccccttcacct
gccacttgcactacggagaactcagaagatgacaagaagaggggacgttcaaccgacagt
gaagtcggtcagtcacctgtgaagaacggaaacccgtcttcctcgttatcctcttcctcc
tcctcctcctcttcctcctcctcgtcctcctcctgctcttcttcatcgtccatcccgggc
ctgacctcatcctcactcgtctctatggcgaccatcaccgggggaggactcagcggctct
gggggtcttcacggcagcttagggggtctcctctccaacacttcggccggcagctacagc
agcgccacccagcagcagccgcacccgtcggcgcagcagcagcagcaacaggccaaaaac
ttagttggccccgtctcctcggctcctatctccatccccaactcctcgaccaacagccac
ctgatgtcctccgccccttctccccccaatgccatcacacaggggctcttcacttccagc
tcccaggcccaggctctgtcggggcccacgccgacctccaacagcctcggcctcagcctc
ggcctctcgctggggaaagggggaatgtccggctgcatcaccaccagccccatgtccggg
agcctcggcctgtcagggatgccggcgtccctgagcagcatggcgagcctcctgtccggc
tccacccccgcaccttacgcccaggcggccgcatcgggagcaatcggctccggccttcca
ggctctctgggcggcatcggcatcaatcctacgacgacccacagcacagtgggctccatc
ggcagcggaagcatcacggtcggtgggccaacgtcctcaacgggaggtctcctgggtccg
gcgccggggttaaccaacgtcggctctggcatgctgggtttgggttctggccagtcaggg
atgcaggggtcttccctggtgtcactgagcccagtcggaggcttagcgccgggtagcgga
gtgggagtcattgggagcaacggaggcagctctggatcagcagggagcggagtggtggga
ggaaacctgtcgctctccgtcaggccgccaagccaacagaagcagaacggtagcaccagt
tacagcgctgtggtagcagacagcacaacagactccgccctcaccagtgccagccaatca
caaagcagccaatcctcgtctttgacctccccagccaaccagcctaaggacactggttcc
agtttactgggctctatttgtatgtcgtccagctccccgtcgccggccttctacagcgag
gccaaagcggtgagcggcggcagcctgctgaacgggccgctgtcctactcgcagtcctcc
gacagcatgaagccccaggagcctctgagcagcctgaagtccatggccgagcgagcagca
ctcagctcagggatggagggtgacgtgtcctccctgcacctcaccccagtctccgtctcc
tgtctcccttcagacatcttccccagcagcactactgtcccgtctggcccgccgtcggcg
cctcagctctcgctgtcagaggtcagcatccccccatcactgggcgtctgcccgctgggg
ccggttcccctgtccaaagaccagctctaccaacaggccatggaagaggcggcgtggacg
cacatgccccacccgtccgactccgagaggatcaggcagtacctgatgaggaacccgtgc
cccaccctgcctttccaccaccaggtgccaccgccccactccgacactgtagagttttac
cagaggctttccaccgaaaccctcttcttcatcttttactacctggagggcacaaaggcc
cagtatctggcagccaaagccctgaagaagcagtcatggaggttccacacaaagtacatg
atgtggtttcagaggcacgaagaacccaagaccatcacggatgagtttgagcagggaaca
tacatttacttcgactatgagaaatggggccagcggaagaaggaaggcttcacgtttgag
taccgctacctagaagaccgagacctccagtga
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