Etheostoma cragini (Arkansas darter): 117957421
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Entry
117957421 CDS
T07493
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117957421 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117957421 (xab2)
03041 Spliceosome [BR:
ecra03041
]
117957421 (xab2)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117957421 (xab2)
Spliceosome [BR:
ecra03041
]
Complex B
Other components
Prp19-related factors
117957421 (xab2)
Complex C
117957421 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_8
TPR_12
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
NRDE-2
TPR_1
Tcf25
N_NLPC_P60
SNAP
Motif
Other DBs
NCBI-GeneID:
117957421
NCBI-ProteinID:
XP_034749027
LinkDB
All DBs
Position
15:11826159..11833592
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTIDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKHVDDLSAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVEAEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSAQMLKATTSSTVSDLAPGQMEIDDMKMLEQKAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELSKQANPDEIDIDEDEEEDDDENQGPEEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaatggaaaacccgatgtcctgtttgaggacgatgatctgccttatgaa
gaggagattatcaggaacccatactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaacggagccaaatccacccttaacatgatatatgagcgggctcttaaagagctgcct
ggcagctataagctgtggtacaattatctgagagagagacggaaacaagtcaaagggaaa
tgtatcactgaaccaagctatgaagagatcaataattgccatgaaagggcattggtgttt
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgtaag
atcacaagaagtcggcaaacatttgaccgtgctctcagagctcttccggttactcaacac
ccacgcatctggcctctctatctccgctttgtgcgtaacctgcccttgcctgagactgcc
atccgggtgtaccgcagataccttaagctttctccagagaatacagaagaatacatagac
tacttacggtctgttggacgcttggatgaagctgctgtgcgactagcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaagtctaactatcaactatggcatgagctttgc
gacctgatctcccagaaccctgataaagtgacctctctaaatgtaggagccatcatccga
ggaggcctcactagattcacagaccaacttggaaaactctggtgctctttagctgactat
tatatcaggagtggtcattttgagaaggcccgtgatgtgtatgaggaggccatcctcaca
gtggtaacagtaagggatttcacacaagtgtttgatagttacgcccagtttgaagagagc
atgattgcagcaaagatggagaccaccgctgagatgggaaaggatgaagatgaggacata
gacatggagcttagactggcccgttttgagcagctgatagcccggcggccccttcttttg
aacagtgttctactgcgacagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctgtatgagggcaatccacggcagatcatcaacacatacactgaggcagtgcagactata
gatccgatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggctaccaaggtgaac
tacaagcacgtagatgacctttctgcggtgtggtgtgagtatggagagatggagctacgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaagcggagtactttgatgcatctgagccagtccaaaacagagtttacaagtccttgaag
gtctggtctatgctggcggacttggaagagagtctcggcactttcaagtctacgaaagca
gtgtatgatcgcatcattgacctccgcatcgccacgccgcagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatt
gctctcttcagatggccaaacgtttatgacatttggaacacatacctcaccaagtttatt
gatcgttatgggggcaagaagctggagagggctagagatttatttgagcaagccctagat
ggctgccctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacatgccatggctgtctacgaaagagcaacgcaggcagtagaagct
gaggagagacatcaaatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acgtacaccagagcaatttaccagaaagctatcgaggtccttcctgatgagcatgcaagg
gacatgtgcctgcgatttgctgacatggagagtaaacttggcgagattgatcgggccaga
gcaatttactcctactgctcccaaatctgtgacccaagggtgactgcaaacttctggcag
acatggaaagaatttgagatccgccatggaaatgaggacacgattagagaaatgctgagg
atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgtctgctcagatg
ctgaaggctacgacaagctccacagtgtcagatcttgctccaggccaaatggaaattgat
gacatgaagatgctggagcagaaagcacagcagcttgctgcagaggccgagcaggacaaa
cccaaactcaaagaaaaaattctctttgtcaggagtgacacctctcgcagtgagttggct
gagctttccaaacaagccaaccctgatgagattgacattgatgaggacgaggaagaagat
gatgatgaaaaccagggaccagaagaggtgcagcttgaacagaagagtgtccccacagct
gtcttcggagggcttaaagacgactga
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