Etheostoma cragini (Arkansas darter): 117957921
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Entry
117957921 CDS
T07493
Symbol
rfx1a
Name
(RefSeq) MHC class II regulatory factor RFX1a isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117957921 (rfx1a)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Other basic domains
RF-X
117957921 (rfx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
C4_MG1
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
117957921
NCBI-ProteinID:
XP_034749900
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All DBs
Position
15:7379178..7391814
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AA seq
1008 aa
AA seq
DB search
MAMSNAKGGFPVLVMATSGYIGEIQPAAQPQGAGVSVTPGPPDASSTPATAPQFLAEIQT
VVATPTVVTSTGQTTPSDQVTTITTPKLADDSLAQSTAQTQAPQTQYVTAEIQGSPSQSG
NAQSTPQYIVVTVTEGSLHSSDSVSDSSPPPAVVQTGVPTHVVQQVQTAQQRSVVQATSQ
IAKTEPGTQLSVTSLQPVHISQELPSTEVTALVRDNNLEECQLQHEIGQPECQAWASADY
ERECCCKPLYLPLDFLQCYQSLYLLSVQEKEIGAHPSVTSSGPDKPPLQATTTTCQVQQQ
LTPVPVQHVYANQVQYVEGGETNYATSTIRSSAFPYTDTTLYTQTTAAQYYEGQPTTGSS
TPGTPLTVSVTAGTTGGVSMFVAQPTSAPGGGATVVTTGGTTNGAGEAAGTNGGAAGSYV
IQGGYMLGSSGGAAGNSQNYSHTARASPATVSITEGEESSVPSADKKVQWLLDNYETAEG
VSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRI
KAGSSLLRLMEDQQHLAMRQQPFSQKQRLKPVHKVEGMTNGTAAAAGAGQQQGSGQVDIS
TQVQQYQQFLDASRALPEFPDIDLQGKSLPEGIEVEHIKSFQLLYREHCEAILDVMVNLQ
FTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCLVLLCKYDPVLRWSRDCDNSLY
QGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRIKVTSANAFAQTL
RRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDF
KLTLQQQNSLEQWAAWLDGVVSQVLKPYQQSPAFPKAAKLFLLKWSFYSSMVIRDLTLRS
AASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFASLGRGLNQLDPDKEEEEE
EEEESDEEGQELSLPSDGAVLGDESLEPPAKLARIDQRVLFTTGSADN
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtcaaatgcaaaagggggattcccagttcttgtaatggccacctcaggctac
ataggtgagatacagccagcagcccaaccccagggggctggtgttagcgtcacaccgggg
ccacctgatgccagttctacccctgcaactgcccctcagtttctggctgagattcagact
gtggtggccacacccactgttgtcacatccacaggccaaactactcccagtgatcaagtt
accactatcaccactcccaagctggcagatgatagtctagcccaatccacagcacagacc
caggctcctcaaacacagtatgtgactgcagagatccagggctccccctcgcaatctgga
aatgctcaaagcactcctcagtacattgtcgttacagtcacagagggctcccttcactca
agtgacagtgtgtcggactctagcccccctccagctgtggtgcaaacaggagttcccacc
catgttgttcagcaggttcagacggctcaacagaggtctgttgtgcaggccacctcacaa
atagccaagactgagccaggcactcagctcagtgttaccagtctgcagcctgttcatatc
agtcaggagctccctagcaccgaggtgacagcgttagtcagggataacaatctagaagaa
tgccagctacaacatgagataggacagccagagtgccaggcctgggcatcagcagactac
gaaagggaatgctgctgcaagcctctctacctcccattggacttccttcagtgttaccaa
tcactgtacctgctctctgtgcaagagaaagagataggagcccacccttcagtcacaagc
tcaggccccgataagccaccactgcaggctacaactaccacttgccaagttcagcagcag
ctcacaccagtgccagtgcaacatgtgtacgccaatcaagtgcagtatgtggaaggagga
gagaccaactacgccaccagcacaatccgttccagcgcctttccttacactgacacaacc
ttgtacacccagaccacagctgcccaatattatgaaggtcagccaactacaggctcatcc
acccctggcacacctctaaccgtctctgtgactgctggcacaacagggggtgtgtccatg
tttgttgcccagcctaccagtgcaccagggggaggggccacagtggtgaccacaggtggc
accaccaatggggcaggtgaagcagcaggcaccaacggtggcgcagcaggcagctatgtg
atccaggggggttacatgctaggcagcagcggaggggcagctggcaacagtcagaactac
tcacacacagcccgcgcctccccagccactgtgagtattacagagggcgaggagagtagc
gtgccgtcggcagacaagaaggtacagtggttgctggacaactatgagacagctgaagga
gtgagtctgccacgttccaccctctactgccactatttgctgcactgccaggagcagaaa
ctagagcctgtcaatgctgcctcttttgggaaactcattagatctgtattcatggggcta
cgcacacgacgcctggggacacggggtaattccaaataccactactacgggctgaggatc
aaggcgggctcctctcttctccgtctgatggaagaccagcaacatctggccatgaggcaa
cagcccttctcacagaaacagaggttaaagcctgtgcataaagtcgagggaatgaccaat
ggcaccgcagcagcagcaggagcaggccagcagcaggggtcagggcaggtggacatcagc
acccaggttcagcagtaccagcagttcctagatgcatcacgcgctctcccagagtttcca
gacatcgacctccaagggaagtctctgccagagggaattgaggtggagcacataaagagc
tttcagctgctgtacagagaacactgtgaggccatactagacgtgatggtcaacctgcag
tttactctggtggaaactctgtggaagaccttctggaggttcagtcaaagtcaggctgga
gatgccacattggctgttcacgatgagtcagaaaagcgcctcccgaagtcctgcctggtg
ttgctgtgcaagtatgatccggtgctgcgctggagtcgggactgtgacaacagcttgtac
cagggcctggtggagatcctcatccctgatgtcctcaggcccattcccagtgccttaact
caagccatccgcaactttgccaagagcctggagagctggctgaccaatgccatgatgaac
atcccagaggaaatggtccgcatcaaggtaacatcagccaatgcatttgcccagactctg
cgtcgctacaccagtctgaaccacctcgcccaggcagcccgtgccgtcctccagaacacg
gcccagatcaaccagatgctctccgacctcaaccgcgttgactttgctaatgtccaggag
caggcttcatgggtgtgcaggtgtgaagaccgtgttgttcagcggctggagcaggatttc
aagctgaccctccagcagcagaactccctggagcagtgggctgcgtggcttgatggtgta
gtctcccaggtcctaaagccctaccagcagagccctgccttcccaaaggccgccaagctc
ttcctactcaagtggtccttttacagttccatggttatcagggacctgactctgaggagt
gcagccagttttggttccttccacctgatccgcctgctgtatgatgagtacatgtactac
ctgatagagcacagagtggcccaggctaaaggagagacccccattgctgtcatgggagag
tttgccagtttaggccggggtctaaaccagctggatcccgacaaagaagaggaagaggaa
gaggaagaggaaagtgatgaggaaggtcaagagctctcccttccctcagacggggctgtg
ctaggagacgagtctctggagccgcctgccaagctggccagaatagaccagagagtcctc
ttcacaaccggatcagctgacaactaa
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