Etheostoma cragini (Arkansas darter): 117958258
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Entry
117958258 CDS
T07493
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117958258 (ddx39ab)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117958258 (ddx39ab)
Spliceosome [BR:
ecra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117958258 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117958258
NCBI-ProteinID:
XP_034750469
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All DBs
Position
15:1524042..1533583
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AA seq
427 aa
AA seq
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MAENDVDSELLDYEEDEEPQGAPESAVPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMSSVKAAVFFGGMVIRKDEEVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFKITPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCI
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgttgatagcgagctgctcgactatgaagaagacgaagagccccaa
ggagcgcccgagagtgcggtccccgccggcaagaaggaggtcaagggttcctacgtgtcc
atccacagctccggcttcagagactttctgctcaaaccagagctgctccgtgcaatcatc
gactgcgggtttgagcatccgtctgaagtccagcatgaatgcatcccacaagccatcctg
ggcatggacatcctgtgccaagccaagtctggaatggggaagacggctgtgtttgtgctg
gccacgctgcagcagatcgaacctgttgatggacaggtgtccgtgttggtcatgtgccac
acgcgagagctggccttccagatcagtaaagagtacgagcggttctccaagtacatgtcc
tcggtgaaggcggccgtgttcttcgggggcatggtcatcaggaaggacgaggaggtcctg
aagaagaactgtccccacatcgtggtcgggacccccggccgcatcctcgctctcatccgc
aacaagacgctcaatctgaagaacgtcaagcacttcgtcctggatgagtgcgacaaaatg
ttggagcagctagacatgaggcgtgacgtgcaggagatcttcaagatcacgccccatgag
aagcaggtcatgatgttcagcgccacgctgagcaaagagatccggcccgtctgccgcaag
ttcatgcaggaccccatggaggtgttcgtggacgacgagaccaagctgacgctacacggc
ctgcagcagtactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
ctcgacgtgttggagttcaaccaggtggtgatctttgtcaagtcagtgcagcgctgcatc
gctctggcccagcttctggtggagcaaaacttccctgccattgccatccacaggggaatg
gctcaggaggagaggctgtctcgctatcagcagtttaaggacttccaaaggcggatcctg
gtggccactaacctctttggccgaggaatggacattgagcgcgtcaatatcgtcttcaac
tacgacatgccagaagattctgacacctatctgcacagggtcgcccgtgctggcaggttt
ggaaccaaaggcctggctatcaccttcgtgtcggacgagacggacgccaagacgctgaac
gacgtccaggaccggtttgaagtcaacgtggcggagctgccggacgagatcgacatctcc
tcttacatcgagcagtccagatga
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