Etheostoma cragini (Arkansas darter): 117958514
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Entry
117958514 CDS
T07493
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ecra01001
]
117958514 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ecra04054
]
117958514 (ciita)
Enzymes [BR:
ecra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117958514 (ciita)
Protein kinases [BR:
ecra01001
]
Serine/threonine kinases: Other
TAF1 family
117958514 (ciita)
Pattern recognition receptors [BR:
ecra04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117958514 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
nSTAND3
NB-ARC
nSTAND_NTPase5
SRP54
Motif
Other DBs
NCBI-GeneID:
117958514
NCBI-ProteinID:
XP_034750843
LinkDB
All DBs
Position
15:complement(5000660..5020869)
Genome browser
AA seq
1644 aa
AA seq
DB search
MPQFEEVLDGVRLALTWASPAEIRALLEGLVKEQIISEAYSKSLSRHQLTDGISPTACKP
GSDMMSSRGSTTHQDQYQLSQVRNCGSSESTESDHNEITSESVSPVDEHDSTWSRPKKHP
LYEYQVIHENNPKLIQELRVGPLMDKHSLNHRLSFTPRVCDYQCGLRLDHEMTEQLRSVE
LMEKQASDNERIDEGNLKYKKEWLEQVEEAARRIAVPLWQHWDRGQRMLLPLVPGITARC
ATSKNIVTDNEPQCAVLDMEEETELAIACRTLDLYADNFKCTEAIADPSFTLDTEGAQKG
LCLSTFDSMPTTGLNTDHFNISGAGRNALPVQACAATDTNNNIADRLEGGLDACWLADRT
TDTTDDLLCLMRDVQCGTDAEFTEDTAHLFSPCTPTDTHADAQDHSFHSYEYKKDERMEL
HWGAKMQHVDQDPFICPDFGVLPDDLSEYLNEDYFSVDTDVLFDSPLLNCEEISTCTDLP
MPTELLCPDSQQQEKKNEITGKTLNRRKRPRALRPQRCTDAKKTSRSKRPRTAGRSKTKV
AEQTVTQGTDKGSQRSSGESVGLSPTQPILHIHPSIQFITIPDSPAYQVVQTLRLSPPVI
GLPLPNTPATPTFILVPAASPTFQRQVPPLSPMGGAVAPFQMSSSPPGSLSDTASKAMSH
LCASPLSPSNEMSICKESRLPPSPTVLDIPSVVKDYIQEAKAHMSQTCQDMESDLGLDSH
YVDVQLSRREILRSGKNTNKDLDKELVIMGDTDRQKSLLGPSHIFEGSNGDKPRRYIMLL
GNAGLGKTTLISKLCLDWSRDCIPQFDFVFSLDGKALSLTESNSSLQTLLLNLSSFATTC
MNPEAVYAQILADPKRVLIIFDGFGELRDYEILLQTLEKDLTSSLQKDSKAQTYTVRQLY
SAILQRVLLPGCTLLLSTRPRGTASQLLRRTDSLLEVCGFTPTDIEIYLSRYFTDPGLRA
SALDCLKNCSYLHRLCWNPGLCRLVCLVLEQCKGLEVLPRTLTGLCHQVLRLKMEKESRS
KHSQADAQTKIAVQSVEKTQTQISSSSQVTRGTKNTPKKSRAQVRTCSRSRRARGSKKQE
KEEDDSDGEGMQSVVGEVDRTEDRELLSRLSSLAWDGVKANSSILPTGRTISAKLKAFGH
RTGLFCSYHLRTRQVVSSREREEGGRVDREEMGTREDGGKRGNKGRTDTENADASDDNIL
FWANPFLQSYLAGLHLSLSRTVTDRAFLQALPFQSGQKGRRRPQREELELTQRFAVGLLF
HNRTELQWLQSYTETAFRDIVAAKQALVTKHLEGLSHGDLNPAQVLEACHYVYEVSSTHG
DASRNSGSTRLVAHLAANLPEVLTFHGVPLKPSDVFAVQNVLERGGTKGRRFCLDLEDSG
IQISGLKSLVGLNNINTYRACIADVITLWEQLEQSGEEGLLQGTVSKFKIHPLKATQVCH
IENLAKLVNIHTHKKLSDSQSDSILAEGVPAVKELHKLEFELGPEKGPLALPKLWEILPG
LHNLQHLDLENSKIGDKGAEKLAEALFSLGSLEILNLSQNCIGDQGVTKLATTLRGLSKL
HCLSLYSNMICDEGAESIAAVLPHMASLTNLDVKYNKLTAVGAQSLGASLKKCTKMKTLR
MWNQCIPYGVFERLQQQDNRILLQ
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgccccagttcgaggaggttctggacggagtgcggctggctctgacctgggcctctcct
gctgagatccgagctctgctggagggtttggtgaaggagcagatcatctcagaggcttat
agcaagagcttgagtcgccaccaacttactgatgggatttcacctactgcatgtaaacca
ggatctgatatgatgagttccagagggtctactacccaccaagaccaatatcaactcagc
caggtgaggaactgtgggtcatcagagtctacagaatctgaccacaacgagatcacatcg
gagtctgtgtcgccagtggatgaacatgatagcacatggtccaggccaaaaaaacatcct
ctatatgaatatcaagtcattcacgagaataatcccaaactaattcaggaattgagagtg
ggaccgctgatggacaaacactctctcaatcacaggctctcttttacaccgagagtatgt
gactaccaatgtgggctcagattagatcatgaaatgacagaacagctgcgcagtgtagaa
ttaatggagaagcaggcaagtgataatgaaagaatagatgaggggaatttgaaatataag
aaggagtggttagagcaggtagaggaggcagctcgaaggatagctgtccctctgtggcag
cactgggatagaggacagaggatgttgctgcccttagttcctggtatcactgctcgctgt
gcaacaagtaaaaacatagtgacagacaatgaaccacaatgcgctgttttagatatggaa
gaggaaacagagcttgcaattgcttgcaggacattagatttgtacgctgacaactttaag
tgtaccgaggcaatcgcagacccaagcttcacactggacacagaaggagcccaaaaagga
ctctgtttatctacatttgacagcatgccgacaactggattgaacacggatcattttaat
atttctggagcaggaagaaatgccttacctgttcaagcctgtgcagctacagacacaaac
aacaacatcgcagacaggctggaaggcggtctggatgcctgctggttagctgacaggaca
acagacacaacagacgacctgctctgtttgatgagagatgtacaatgtggcacagatgca
gaatttacagaagacactgcacatttgttttctccctgcacaccaacagacactcatgct
gacgcacaagatcactcgtttcactcttatgagtataaaaaagatgagaggatggagtta
cactggggtgccaagatgcagcacgtggatcaggacccatttatctgtcctgactttgga
gttctaccagatgatttatctgaatacttgaatgaagattacttttctgtggacacagat
gtgctctttgacagtccattgttgaattgtgaggaaatcagcacctgcactgatcttccc
atgccaacagagctgctgtgccctgacagccagcagcaggaaaagaagaatgaaataaca
gggaaaacacttaacaggagaaaaagacccagagctctccgaccacaacggtgcaccgat
gcgaaaaaaacatctaggtcaaaaaggccaagaacagcaggacgatcaaaaaccaaagtg
gctgagcagactgtcactcaaggcacagacaaaggatcacagaggagttcaggagagtcc
gtgggcctctcccccactcaaccaatccttcatatccatccctccattcagtttatcacc
atcccagactctccagcgtatcaggtggttcagacactgaggctctctcctccagttatt
ggacttccactccccaacacacctgctacacctacgttcatattagttcctgctgcctcg
ccaaccttccaacgccaagtgccacccctctccccgatgggcggtgcagtagcgccattc
caaatgagttcatccccgccaggatctctgtcagacaccgcaagtaaagccatgtctcac
ctttgtgcctcacccctctcccccagcaatgaaatgtctatatgtaaggaatcccgtctt
cctccgtctcccactgtccttgatattccatcggttgtaaaggactacattcaggaagcc
aaagcacacatgagtcaaacctgccaggatatggagtcagaccttggcctggattctcat
tatgtggatgtgcaactgagccggagagagattcttcgctctggaaaaaacacaaacaaa
gatttggacaaggagctggtcatcatgggagatacagatcgtcaaaaaagcttgttgggg
ccgagtcatattttcgaaggctccaatggcgacaaacccagacgctacataatgctactt
ggcaatgctggccttggaaaaaccaccctgatcagcaaactgtgtctcgactggtccaga
gactgcatcccacagtttgattttgtcttctctttagatggcaaagcactctctttaacg
gagtcgaacagtagccttcagaccctcctattaaacctttcctcctttgccactacctgc
atgaaccccgaagcagtgtacgctcaaatccttgcagaccctaagcgtgtgctcattatt
tttgatgggtttggcgagttgagggactatgaaattcttctccagactctggaaaaagac
ttgacatcttcattgcagaaagacagtaaagcccagacatacacagtaagacagttatac
tctgccatccttcagagggtcctccttccaggttgcacccttctgctctccactcgacca
agaggcactgccagccagcttctccggaggacagacagccttttggaggtttgtggcttc
acccccacagacatagagatatatttgtctaggtacttcactgaccctggtctcagagca
tctgctttggactgcttaaaaaactgcagctatctacatcgcctctgctggaaccctgga
ctgtgtcggttggtctgcttggttttagaacaatgcaaaggtttagaggtcctaccaaga
actttgaccgggctctgccatcaagtgcttcgtctgaaaatggaaaaagagagcaggagc
aaacactcgcaggctgatgctcaaaccaaaatagctgtacaatcagtagaaaaaacccag
acacaaatctcaagtagttctcaagttacgaggggtactaaaaacactccgaagaagtct
agagcacaggttcgcacttgctctcgcagccgaagagcgagggggtcaaaaaaacaggag
aaagaggaagatgacagtgatggagaggggatgcagagtgttgtcggggaagtagataga
acagaggacagagagttgctgtcccggctgagttctttggcctgggatggggtcaaagca
aactcctccatcctccccacaggacggactatatctgccaaacttaaggcattcggccac
aggacagggctcttctgctcttaccatctgaggacgaggcaggttgtctctagtagagag
agagaggaaggaggaagagtagacagagaagaaatgggaacacgagaggatggaggaaag
aggggaaacaaggggaggacggacactgaaaacgctgatgccagtgatgacaacatcctg
ttttgggccaacccttttcttcagagttacctggcagggctccatttgtctttgtcaagg
actgtaacagaccgggctttcctccaggccttacctttccagtcaggccagaagggacgt
cggcgaccacaaagggaagagctcgagcttactcagcgatttgccgttgggcttctcttc
cataacaggacagagctgcagtggcttcagtcatacacagagacagcctttagagatata
gtggctgccaagcaggctttagtaactaaacaccttgagggtctttcccatggtgacctg
aaccctgcccaggtcctggaggcatgtcactatgtttatgaggtgagttccacacatggt
gatgccagcagaaacagtggcagcacgcgattagtcgctcacctggcagcaaatctccca
gaagtcctgacatttcatggagttccactcaagccatcagacgtgttcgctgtgcagaac
gttcttgaaaggggtggaactaaaggtagacggttctgtttggatctggaggattctggg
atacaaatttcgggactcaaatccctagtggggctcaacaacatcaacacatacagggca
tgcattgcagatgtcatcaccttatgggagcagttagagcagagtggcgaagaagggctc
ctacaagggacggtgtccaaattcaagatccaccctctgaaggccacacaggtgtgtcac
atagagaacttggcaaagctggtgaacatacatacgcacaagaagctgtcggacagccaa
tcagattccatcctggccgagggagtaccagctgtcaaagagctacacaagctggaattt
gaacttggtccagagaaaggtcccctggctcttcccaagctgtgggagatcctgccgggt
ctacataacctacagcacttagatctagagaacagtaagataggagacaaaggggcagag
aaattggctgaggctttattctcacttggttccctggagatactcaatctgtcacagaat
tgtataggagaccagggggtgacaaaactggcaaccacgttgaggggcctgtccaaactg
cactgtttaagcctctacagtaacatgatttgtgatgaaggggcggagagtatagcagct
gtcctgccacacatggcttcgctcactaacctggatgtgaagtacaacaagcttacagct
gttggagcgcagagcctgggagccagtctgaaaaaatgtacaaaaatgaaaaccttgagg
atgtggaaccagtgtattccatacggagtgtttgagagacttcagcagcaggacaaccgg
atccttctgcagtag
DBGET
integrated database retrieval system
