Etheostoma cragini (Arkansas darter): 117958546
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Entry
117958546 CDS
T07493
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117958546
04020 Calcium signaling pathway
117958546
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117958546
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117958546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117958546
NCBI-ProteinID:
XP_034750889
LinkDB
All DBs
Position
15:complement(5381071..5489626)
Genome browser
AA seq
2539 aa
AA seq
DB search
MTDGEGRARFQYAECPEAQVQEKVREEVRLAIPTPYRNDAPGQDVDPGGGHDEEEEEEVE
KRKGGRRRRRRSGTGRGDGAEWSPEVQEHEDQEPEVEVGPTLGVRIRAPIRDPDCVSEEE
QQQQQQLYPVLAPLAFFCLKQTTKPRNWCLRVVCNPWFEHVSMLVILLNCVTLGMFQPCE
DVTCQSEWCRILQVLDDCIFAFFAVEMVIKMVALGIFGSNCYLGDKWNQLDFVIVMAGVL
EYSLDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIF
GIVGVQLWAGLLRNRCFLGENHRIITMYNLSISEYYMSEEGEDSPFICSAPRENGMLRCS
SVPPYMERGAECTLPAPHLYSALIGTGGASVNGCVNWNQYYNVCRRGNFNPHKGAVNFDN
IGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFVYFILLIIVGSFFMINLCLVVIATQFS
ETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRYISHLYRKFTRRLQRIYSGWH
SKRRKKVNPNGGGSNGGGNGHGHGSSRGCGGLGPGSALWLRPIHNLLQHHQHQHCRLSNG
GQHSISVTPAKHTDSEGGEELEMKSIPVQTESTNGNGGSGGPSTVTQGMGALLGRLNGGM
NYPTILPSFVCSYSSKTPPPHSQQRGHSPEQHPPNHPASEHTETLNKLYQLMGQHSRQRL
LYQLAGVVPSPLLLELLSCPMCARSLETLELELGDLEGGRGEADGLHNFPQGGDLRGGRV
RIRRRGVVEYKNGLVRAWVGFREKLKRIVESKYFNRGIMIAILVNTLSMGIEYHEQPEEL
TDVLEISNIVFTSMFVLEMGFMLLAFGLLGYIRNPYNIFDSIIVIISVWEIIGQADGGLS
VLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFTFSILGMHLFGCKF
SLETENGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTF
GNYVLFNLLVAILVEGFQAEGDANRSESDDDKKSDNFEEDEKVEQLRDTELKMYSLMMTA
NGHVDPRGSMAPPIIMHTAATPMPTPKGSLGPESVLGGELMFSQGVPQYGEVGLGFSEPG
SGHAESRRGSSTSMDPLSYDQHSLNLSSPGRRSPLPPRSWGSRRSSWNSLGRAPSLKRRD
TSGERESLLSGEGGEEEDGGQDKAEAGGNNRLRPESLELLPASTLCPSIIAEYSDCNGRT
VTYDPNVNSEPKDDSSPEDDMDDESSFWYWIRKELRNMKPRWCIEHEDWTLYLFSPESIL
RGWCQSVISHKLFDHVVLVFIFLNCITIALERPEIQLHSKERVFLSVSNYVFTVIFLAEM
AIKVVALGFCFGKQAYLQSSWNVLDGFLVFVSLVDILVSLAYTSGNRILGILRVLRLLRT
LRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFIVFGILGVQLFKGKFYHCEGPD
TKNITNKSDCLQANYRWIRRKYNFDNLVQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQP
VRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEARLREEKRLKMIEK
KRRSKENGGAEAKQRPYYADYSPIRLSIHTLCTSHYLDLFITFIICINVFTMSIEHYNQP
QYLEEVLKYCNYVFTCIFIVEALLKLTAFGIQRFFKDRWNQLDIAIVALSIMGITLEELK
MNAALPINPTIIRIMRVLRIARVLKLLKMATGMRSLLDTVMQALPQVGNLGLLFMLLFFI
YAALGVELFGRLVCNDNNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECH
PEDRHCLSYLPLVSPIYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIAL
EMAMENQRKLSTTSDNSSVGGTYVGPCPHSPGQVEEEVQCGDQDLLSSRKMSVSRMHSLP
NDSYMFRPVRPASAPNPLEEVELSPQHQHSGSVTSVHSQPCDSRALLQVPDVSPIHPRSP
STLTMTRIAPPTPSSSPRALHRQVAVKVDSVESQGCAQQERPNPVHLPPVSPSTLSPLTS
SPSPLPPPPPSSPSSLYLPSCSHSTFPLPPPSPRHPLLSSPSSVFPPLSSPSLLLPPPRS
PRLPLRPPSLQRPRPSSAVSLCDPADEEVYHITSSASHRWWDEEGGGQESRGKVGRSHSL
SPYTTPFSLNSPSPPSLPPSSSRSKLSLLGAALMDCDSRKALSVDNQAVLDRPTLLSAGY
PDDQRRHSIEVCLPQAVLTSDNQHFAREAHRSEKGGQAFTVRVQSVGGGHRKKKISPPCI
SIHPPSERELPQIASPPKLADCSMMLRRRTPSYDLTPHSQSNTQDVSADSQMRTQIHSPR
HTPLTPIHIPLQAHSPTHTLIRSRASTPTHTHAYTPPHASTPTLPHIPISPNIFIQPHAP
LVPMPFSQAHSLSPAARHSSLTGDYIPLPQFTFEEPQSRYMSGLSAGLSDTDTATCSSPF
DNRLGSGAGFSAKNRRTAQ
NT seq
7620 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagcgcgctttcagtacgcagagtgcccggaggcacaggtg
caggagaaggtgcgggaggaggtgaggcttgctataccgacgccatacaggaatgacgcc
cctggtcaggatgttgaccctggaggaggccatgatgaggaggaagaggaggaggtggag
aagaggaagggggggaggaggaggaggaggagaagcggtactggccggggcgatggagca
gaatggagtcccgaggttcaggagcatgaagaccaggaaccggaagtggaagttggacca
acattgggagttcgcatcagggctcctattcgggatccagactgtgtttccgaggaggag
cagcagcagcagcagcagctgtaccctgtcctggcccccctggccttcttctgcttaaag
caaacaacaaagcctcgcaactggtgtcttcgcgtcgtctgtaacccgtggttcgagcac
gtatccatgctggtgatcctgctcaactgcgtgactctggggatgttccagccctgtgaa
gacgtcacatgtcagtcggagtggtgccgcatcctacaggtactggacgactgtatcttt
gctttctttgctgtggaaatggtcatcaagatggtggccctgggaatctttggctccaac
tgttacctaggtgacaagtggaaccagcttgattttgtcatcgtcatggcaggggtgctg
gagtattctctggatggccataacgccagtctgtcagccattcgtaccgtccgagtgctc
aggccactgcgggctatcaacagagtaccaagtatgaggatcttagtgacgctgctgttg
gacaccctgcccatgctgggaaacgtccttctcctctgcttctttgtctttttcatcttt
ggtattgtgggagtccaactgtgggcggggctactgcgcaaccgctgcttcctgggagag
aaccataggatcataacaatgtacaacttgtccataagtgagtactacatgtccgaggaa
ggtgaagacagcccgttcatctgctcggctccccgtgagaacgggatgctgcgctgcagc
agcgtgccaccctacatggagcgtggggccgagtgcaccttgcccgctccccacctatat
tcagctctgattggaacgggtggggccagtgttaatggctgtgttaattggaaccagtat
tataatgtgtgtcgccgcgggaacttcaaccctcacaaaggagcagtcaactttgacaat
atcggctacgcctggatagccatattccaggtcatcactttggaaggatgggttgatatc
atgtactatgtcatggatgctcactccttctacaattttgtatattttatattgctcatt
atcgtgggctctttcttcatgatcaacttgtgcctcgtggtcatcgccacccagttctcc
gagacaaagcaaagggagaacgctctgatgagggagcagcgtgctcgctacatgtccaac
gactccaccctcgccagctacagcgaaccaggctcatgctacgaggagatgctacgctac
attagccacctatatcgcaagttcacgcgcagactgcagaggatatactctggatggcac
agtaaaaggcgtaaaaaggtgaatcctaatggcggaggcagtaacggcgggggtaacggc
cacggccacggctccagcagaggctgcggaggcttaggcccgggtagcgcattgtggttg
agaccgatccataaccttctgcagcaccatcaacaccagcactgtcgactcagcaacggg
ggccagcactccattagcgtaacacctgccaaacacactgacagtgaaggaggggaggag
ctggaaatgaagtccattcctgtccagacagaaagtacaaatggaaatggcggcagcggc
ggcccgtccactgttacccagggcatgggggcattgctcgggcgtctgaatggcgggatg
aactatccaacgattctgccgtcgtttgtgtgcagctacagcagtaagacgccgcccccc
cactcccagcagcgtgggcacagtccagagcagcacccaccaaaccacccagcatctgaa
cacacagagactctaaacaagctctaccagctcatggggcagcacagtcgccagaggctg
ctgtaccagctggcaggcgtggttcccagccctctgctcctggagctgctaagctgccca
atgtgtgcccgcagcctggagaccctagagctggaactgggagacctggagggaggcagg
ggagaggctgacggtctacacaacttcccccaggggggagatctgagaggcgggcgagtt
cggatcagacggcgaggggtcgtggagtacaaaaatggattggttcgggcctgggtaggc
ttcagggaaaaactgaagaggattgtggaaagtaaatacttcaaccgagggatcatgatc
gctatcctcgtcaatactctcagcatggggatagagtaccacgagcagccggaggaattg
actgatgtgttagagatcagtaacatcgttttcaccagcatgttcgtcctggagatgggc
ttcatgctactggcttttggcttgttaggatacatcaggaacccatacaacatattcgac
agcatcattgtgatcatcagtgtgtgggagataattggtcaagcagatggtgggttgtca
gtcctgcgaacatttcgtctgctgcgggttctgaagttggttcgcttccttcccgccctg
aggagacaactggtagtgctaatgaagaccatggacaacgtcgccacattctgcatgctg
ctgatgcttttcattttcacttttagtatactgggtatgcacctatttggctgtaaattc
agtcttgagactgagaacggagacaccatccccgaccgaaagaactttgactctctgctc
tgggctattgtcactgtgttccagattctaacccaggaggactggaatgtggtgttatat
aacggcatggcctccacctcaccatgggcggctctctactttgttgctctgatgacattc
ggcaactacgtgctcttcaatttacttgtggctatcttggttgagggcttccaggctgag
ggtgatgctaatcggtcggagtcagatgatgacaagaaatctgacaattttgaggaggac
gagaaggtagaacagctcagagacactgagctaaaaatgtactctctgatgatgacagcc
aacggtcatgttgatcctcgcggctcgatggctcctccgataatcatgcacacggcagcc
acacccatgcccactcccaaagggtctctgggacctgagtcggtccttgggggggagctc
atgttcagtcagggggttcctcagtatggtgaggttggactggggttttctgagcccgga
agtggtcatgcagagtctcgccgtggaagctccacctccatggaccctttatcctatgat
cagcattctctgaatctctcaagtcccggccggcgctcccctcttcctcctcgttcatgg
gggagccgtcgctccagctggaacagtctgggaagagcgccgagcctcaaaaggcgagat
accagcggagagagggagagcctgttgtctggggagggaggagaggaggaagatggtggg
caggacaaggcggaggccgggggaaacaacagactacgaccagaatccttggagctgctg
ccggcgtccactctttgtccttccataatagcggagtacagtgactgtaatgggagaacc
gtgacctatgatcccaatgtgaactccgaacccaaggatgactcctcgcctgaagatgac
atggatgatgaaagttctttctggtactggatcagaaaagagctccgtaacatgaagccg
cgctggtgcattgagcatgaagactggacgctgtatttgttctctccagagagcatatta
cgtgggtggtgccaaagtgtgatctctcacaaattgttcgaccatgtagttctggttttc
atcttcctcaactgcatcaccattgctctggaaagacctgagatacagcttcatagcaag
gagcgagtgtttctgagtgtgtccaactacgttttcactgtgattttcctggcagagatg
gccatcaaggttgtagctctcggtttctgctttggaaagcaggcttacctccagtccagc
tggaatgttctggatggttttttggtgtttgtgtctctggtcgacattctggtctctctg
gcctacactagtggaaacaggatcctgggaatcctcagagtcctacgtctgctacgaaca
ctacgcccactgagggtgatcagccgagccccgggattgaagctggttgtggagacgctc
atcacctctctcagacccatcgggaacattgtccttatctgctgcgccttcttcattgtc
tttggcatcttgggtgtgcagctgttcaaggggaagttctaccactgtgaaggtccggac
acgaaaaacatcactaacaagtctgactgtcttcaggccaactaccgctggatacgaagg
aagtacaactttgacaacctggttcaggctctgatgtctttgtttgtgctgtcctgtaag
gatggttgggtcaacatcatgtatgacgggctggatgcagtgggagtggaccaacagcct
gtaagaaaccacaacccctggatgctgctctacttcatctcttttctgctcatcgtaagc
ttcttcgtcctcaacatgtttgtcggtgtcgtggtggagaacttccacaagtgccggcag
gaccaggaagaggaggaggcccgcttaagggaagagaagaggctcaaaatgatagagaaa
aagcgcaggagtaaggagaatggaggggctgaggccaagcagaggccttactatgcggac
tattctcccattcgtctgtccatccacacactgtgtaccagccactacctggacctgttt
atcaccttcatcatctgcatcaacgtcttcaccatgagcattgagcactacaatcagccg
cagtatttggaggaggttctgaagtactgtaactacgtgtttacctgcatcttcatcgtc
gaggccctgctcaaactcacggcatttggcatacaaaggttcttcaaagacaggtggaat
cagctggatatagctatagtggcgctgtccatcatgggcatcaccctggaggagctgaag
atgaacgcagcactgcccataaatcctaccatcatcagaatcatgagagtactcagaata
gcacgagtgctaaaacttctgaagatggccacagggatgcgatctctgctggatacggtc
atgcaagcgctgccacaggtgggaaatctcggtctcctcttcatgctgctcttcttcatc
tacgctgcgctgggagtggagctctttggcagactggtgtgcaatgacaacaacccatgt
gagggtctgagtcgccatgcaacgttcgagaactttgggatggctttcctcacactgttt
cgagtgtccactggagacaactggaatgggattatgaaagacacgttaagggagtgtcat
ccagaggaccgccactgtctctcctacctgcctttagtctctccaatttactttgtcacc
tttgtgctgatggcccagtttgtgctggtcaatgtggtggtggctgttttgatgaaacat
ctcgaggaaagcaacaaggaggctaaagaggatgcagagatggatgcagagattgccttg
gaaatggccatggagaaccaacgcaaattaagcacaacctccgacaacagttcggtggga
ggaacctatgttgggccatgtccacattcacctggacaggtggaggaagaggtgcagtgc
ggtgaccaggatctgctgtcgtcaaggaagatgtctgtttccaggatgcactctctgcct
aacgacagctacatgttccgacctgtgcggcccgccagcgcccccaaccctttagaggag
gtagagcttagtccgcagcaccagcattcaggctcagtgacatcggtccactcccagcca
tgtgatagccgtgcattgctgcaagtaccagacgtttcccccattcaccctcggtcacct
tccaccctcaccatgacccgcatcgccccacccacgcccagctcctccccacgggccctg
cacagacaggtggccgttaaagtggattctgtggagtcccagggttgtgcgcaacaggag
aggcccaaccctgtccatctgcctcccgtctccccttctaccctctctcctcttacttcc
tctccatctcccctgcctcctcctcctccttcctccccctcatccctctatctcccatcc
tgctcccattcaaccttccctcttcctcctccctctcctcggcatcctctactttcctcc
ccttcttcagtatttcctccactatcttctccctcacttcttctcccgccacctcgctcc
ccccgcctccccctgcgccctcccagcctacagagacctagaccgtcctctgctgtctcc
ctctgcgacccggcagatgaggaagtgtatcacatcaccagctcagccagccacaggtgg
tgggatgaggagggaggagggcaggagagcagggggaaggttggccgcagccactccctc
tccccttacaccaccccgttttctctcaactccccttctcctccctcgctaccaccttcc
tcctcgaggagcaagctcagcctgcttggggcggcattgatggactgtgactctaggaag
gctttaagcgttgacaaccaggccgtcctggacaggccgacattattgtctgctggttac
cctgacgaccaacggcgccactctattgaggtctgcctcccacaggctgtcctcaccagt
gacaaccaacattttgcacgtgaggcccacaggtcggaaaaaggtggtcaggcatttacc
gtgagggtgcagtcagtcgggggcggccacagaaagaagaagattagtcctccttgtata
tccatccacccgccgtcagagagggaactcccgcaaattgcctcacccccaaaactggct
gactgcagcatgatgctaagacgcaggaccccatcctacgacttgaccccgcattcccag
tcaaacacacaagacgtctctgcagattcacagatgcgcacacagattcactcccctagg
cacacaccgctcacacctatccacataccactacaagcacactcgccaacacacacattg
atacgctcacgggcgtctactccgacacacactcatgcatacactccaccacatgcatcc
acacctacactcccacacatcccgatcagcccaaacatcttcatccagccacatgcacct
cttgtcccgatgcctttctcacaagcgcactccctctcccctgctgcgaggcactcctct
ctcacaggggactacatccccctcccacagttcaccttcgaggaaccgcagtccagatac
atgagtggcctgtcggccggtctatcagacacagatacagccacctgctcttcccccttc
gacaacagactgggcagcggtgcaggattcagtgcaaagaatcggaggacagcccaatga
DBGET
integrated database retrieval system
