Etheostoma cragini (Arkansas darter): 117958822
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Entry
117958822 CDS
T07493
Symbol
cacna1bb
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117958822 (cacna1bb)
04020 Calcium signaling pathway
117958822 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117958822 (cacna1bb)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117958822 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117958822
NCBI-ProteinID:
XP_034751325
LinkDB
All DBs
Position
16:5551936..5763374
Genome browser
AA seq
2550 aa
AA seq
DB search
MKRALPYNSRWQERRSTVVYAVRAATLGSWRMLTLGAEYEDTWAPSADRMCRPSQQVEEK
AGPVEGADTGAGDPEGRSWRAGDTDAVPKYDTVIHLDGQGSAGKRDGVRQIVRKHETLNS
TPWPRGMARFADDLPTRYGGGAGGGGRGAPGSGRGGARGGGGAPGGQRVYKQSMAQRART
MAIYNPNPVKQNCLTVNRSLFIFREDNLIRKYAKRITEWPPFEYMILATIIANCIVLALE
QHLPASDKTPMSERLEDTEPYFIGIFCFEAAIKIIALGFAFHKGSYLRNGWNVMDFVVVL
TGILATVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIV
MFAIIGVEFYMGKFHTTCFKIETGERAADWPCGLEPPARMCPNGTQCREYWTGPNFGITN
FDNILFAVLTVFQCITMEGWVDILYSTNDVAGNTWNWLYFIPLIIIGSFFMLNLVLGVLS
GEFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEEEDEIAEEKSPLDGA
WYKRKQNLPVMKRGHVKKGKNDLIGAEEGDDPFTDISSVAPPGSPFGRASVKSGGKLDSS
SYFRRKEKRTRFFIRRMVKAQSFYWIVLCLVGLNTLCVAIVHYDQPEWLTRALYTAEFVF
LGLFLTEMALKMYGIGVRNYFHSSFNCFDFGVIVGSIFEVIWDMIKPGASFGISVLRALR
LLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGHFKTMDSG
FGRFNFEDETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESHGGVRRGMFSSVYFIV
LTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEEAANKKLALQKALEVKEVSPMSAAN
ISIAAFVKQNRDANSRRSSINSIQSASYSVYSSPARRILSKEQQRSAKAMSVWEQRTNQL
RRHNMRTSSEALFNELDPEERLQVSSALHLHPDMKTHLDRPLVVEAKNGDKPSRSAEGGR
DEADDPRQESTSENFRTHSRKHHRHRDRNGESRDGGEDWGGRHHVHHSRSRDHNTDSGQI
REKRGESSHSRDGGQGHRHHQQAGSPEEDVSDFRRGEESGHRHHHSHRPPKEGNGRIGNG
AQGERRGNGGGGGDSNGERKGRCSRMVRAQSTLDRDDCKRNKNGIKGHRERQSDAEEDGL
ASSPQQLMRSSLSLGEKQEDADNQKNSTRASQAGLNSNAIHIPVTITAPPGETTIIPMNN
IDCDNFQLSDEKKDLEEEEEAANGPRQILPYSSMFVFGQRNPVRRLCHYMVNLRYFEMCI
LMVITMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPGAYFR
DLWNILDFIVVSGALVAFACSSLMGSQQSVARGTKGKDINTIKSLRVLRVLRPLKTIKRL
PKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGQ
FLDYDRDDVAAQPREWRKYEFHYDNVLWAFLTLFTVSTGEGWPLVLKHSVDATYEDQGPS
PGFRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAIN
AKPLTRYMPENKQSFQYRMWKFVVSSPFEYAIMTLIALNTVVLMMKFYGAPDLYESMLKY
LNIVFTALFTLECILKIIAFGPLNYLKAAWNVFDFVTVLGSITDILVTEIKTDKMINLSF
LRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIEL
NEETAINHHNNFQTFFQALTLLFRSATGEAWHEIMLACLSNRPCDKLSGTVGKECGSEFA
YFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIRVWAEYDPAACGRI
CYQDMYKLLRFISPPLGLGKKCPNRVAYKRLVKMNMPIGADNTVHFTSTLMALIRTALEI
KLASGVLAQHLCDADLKREINRVWPNLSQKTVDLLVTPPKYNELTVGKVYAALMIFDYYK
QTCAKRLQQQHSTGGPQSKLGALFRPMLPLTQIPEVEPTVCSPKQPLPPPPEPEAKPELL
PTTTIISVDRDTILNKKSTIKHSQSGDVSQSAQQRPKGRRKLQRGQSEDVPYSTRPQEFV
ELKQVENISDTEGYPILEGHCRAASLPRLNAEYYRSHPRNAPGTHLAPIVDLSPIKRSAS
SLTPQLREYDLERPGLAQSSTGPGQVQGQDRAHHHHHHHRCHRRRDKDKDKKQTSLDRAA
SVQPSSTVDSFTDSSAEGLSRERARERDRSRAHERRHHSSAGEKQRYYSCDRYGSREQCH
TRSAGPSRSTSPGEGQDAGLPKQHGGSLVKAGPITLPSGSSTLGRGRRQLPQTPLTPRPA
VAYKTAISSPLQSGASTATSGHQTRFSRGLSEHERLHWGHDESPIPVTRIGSDPNLNQQP
QVASQHGLLEEDFQDTVNGQGGGRSARIAASTTASASHGPAAVPVTAAATHGRAGGVPNG
YHFTLGVNSASGPGSRGTGSLREREEEDWC
NT seq
7653 nt
NT seq
+upstream
nt +downstream
nt
atgaagagagcacttccttacaactccagatggcaagagagacgatccactgtggtttat
gcggtacgtgcagccaccttgggttcctggaggatgctcaccttgggagcagagtacgag
gatacctgggctccgtcggctgacaggatgtgccgtcccagtcagcaggtggaggagaaa
gcggggcctgtcgagggagcagacaccggcgctggagaccccgaggggcggtcgtggaga
gccggtgataccgacgccgtgcccaagtatgacacagttatacacctggacgggcagggc
agcgcgggaaagagagacggtgtgcgtcagatcgtcaggaagcacgagaccctaaacagc
acgccatggccccgtggaatggctcgcttcgcagatgatctacccacccgctatggagga
ggcgcaggcggcggggggagaggcgcaccgggctccgggagagggggagcccggggtggt
ggcggcgctccgggtggccagagggtgtacaagcagtcgatggcccagcgagcccggaca
atggccatttataacccgaaccctgtcaaacaaaactgcctcactgtcaaccgctccctc
ttcatcttccgcgaggacaacctcatcaggaagtatgctaagcgaataaccgagtggcct
ccatttgagtacatgatcctggctacaattatcgccaactgcatcgttttggccctggag
cagcatctacctgccagcgacaagacacccatgtcagaacgcctggaagacacagagccc
tactttattggaatattctgtttcgaggctgccattaagatcatcgccctgggctttgcg
tttcacaaaggctcctacctccgcaacggctggaatgtaatggacttcgtggtcgtcctc
acgggaatcctggccacggtggggtcggactttgacctgcgaacgctgcgcgcggtgaga
gtgctgagacccctgaaactcgtgtcaggaatccctagtctccaggtggtattgaagtcc
ataatgaaagccatggttcctctgcttcagatcggcctgctgcttttcttcgccattgtc
atgttcgccatcatcggggtggagttttacatgggcaaattccacaccacctgcttcaag
atagagactggtgagagagctgcagactggccttgtggtctggagccccctgccaggatg
tgtcccaacgggacccaatgcagagagtactggactggacccaactttggcatcaccaac
tttgacaacatcctgtttgcagtgcttactgtgttccagtgcatcaccatggagggctgg
gtggacatcctatacagcaccaatgatgtagcaggaaacacctggaactggctctacttc
atccctctcatcatcatcggctccttcttcatgctcaacctggtgcttggtgtcctgtca
ggagaatttgccaaagaaagagagcgtgtggagaagaggcaggagttcctgaagctccgg
aggcagcagcagatcgagagagagctcaccgggtacttggagtggatctgcaaagcagag
gaggtgttgctggaggaggaggatgagattgcagaagagaagtccccgctggacggtgcg
tggtacaagaggaagcaaaatcttccagtcatgaaacgaggccatgtcaagaaaggcaaa
aacgacctgatcggtgctgaggagggggacgatcctttcacagacatttcgtctgttgct
cctcctggttctccgtttggtcgggccagtgtgaaaagcggcggtaagctcgacagctcc
tcctacttccgacgtaaagagaagaggacccggttcttcatccgccgcatggtgaaagct
cagagcttctactggatagttctgtgtctggttggcctcaacactctgtgtgtggccatt
gtccactatgaccagcccgagtggcttacaagggccctctacacagcagagtttgtgttc
ctgggtttgtttctgactgagatggccttaaagatgtacggcatcggagtaaggaattat
ttccactcgtcctttaactgctttgatttcggggtcattgttggaagtattttcgaggtg
atctgggacatgattaaaccaggagcatcgtttggtatcagtgtgttgagagccctgcga
ctgctcaggatattcaaagtcaccaagtattggaactcgttgaggaaccttgtggtttcc
ctcctcaattccatgaagtccatcatcagcttgctcttcctcctcttcctcttcattgtg
gtctttgctctgctgggcatgcagctcttcggaggacatttcaagaccatggattcaggt
tttggcaggtttaactttgaagatgagacgccaacaacaaactttgataccttcccggca
gccatccttactgtgttccagattctgactggcgaggactggaacgccgtgatgtaccac
gggatcgagtctcacgggggcgttcgccgtggcatgttctcttctgtctacttcattgtc
ctcacactctttggaaactacaccctgctgaatgtctttttggctatcgctgtcgataac
cttgcaaatgcacaagaactgactaaggatgaagaggagcaggaggaggcagccaataag
aagcttgccctgcagaaggctttggaggtgaaggaagtcagcccgatgtcagcagccaac
atctcaatcgctgcttttgtaaagcaaaatcgagatgcaaactctcgcaggtcgtccatc
aacagcattcagtcagcgagttattctgtctactcctcccctgcccgacgaatcttgagt
aaggagcagcagcggtcagcaaaggccatgtcagtgtgggagcagaggaccaaccagctg
aggagacacaacatgaggacaagcagcgaggctttgttcaacgagctcgaccctgaggaa
cgccttcaggtgtcctccgccctccacctgcaccctgacatgaagactcacctggaccgg
ccacttgtggtcgaggccaagaacggtgacaaacccagcaggtctgctgaaggaggacgg
gatgaggcagacgatccccggcaggaatcgacaagtgaaaacttccgaacacactctagg
aaacatcacaggcaccgtgacaggaatggagagagcagggatggaggtgaagactgggga
gggaggcaccatgtccatcacagccggagcagagatcacaacacagacagtggccagata
agagagaagagaggagagagtagccacagccgcgatggagggcagggacacaggcaccat
caacaggctggttcccctgaggaggacgtcagtgacttccgaagaggagaagaaagcgga
caccgccaccatcactcccatcgtccaccaaaagagggaaacgggaggatagggaatggt
gcgcagggagagcgcagggggaacgggggaggaggaggagatagtaatggagagaggaag
gggcgctgctctcgtatggtcagagctcagtctacactggatagagacgactgtaagagg
aacaagaatggaatcaaaggccacagggagaggcagtcagatgctgaggaggacggcctc
gcctccagtcctcagcagctaatgcggagtagcctgagtctaggagaaaagcaagaggat
gctgacaaccagaagaactccaccagggccagccaggccggcctcaacagcaacgccatc
cacatccctgtcaccatcactgctcctcctggagaaaccaccatcatacccatgaacaat
atcgactgcgacaactttcaactcagtgatgagaagaaggacctggaggaggaggaggag
gcagctaatgggcctcggcagattcttccctacagctccatgttcgtctttgggcaaaga
aacccggtgcggcgactgtgtcactacatggtcaacctacgctattttgaaatgtgcatc
ctgatggtcattaccatgagcagcatcgctctagcagccgaggaccccgtgcaagccaat
gcaccgcgaaacaatgttctcaagtatctggactatgtctttaccggggtcttcactttt
gagatggtgataaagatgattgacttgggactgctcctccaccctggcgcttatttccgt
gacctgtggaacattctggacttcattgtcgtcagcggagctctggtggcctttgcctgc
tcgagccttatgggatcgcaacaaagcgtggccagagggacgaaaggcaaggacatcaac
accatcaagtccctgagggtcctccgagtcctgcggccactcaagaccattaaacggctt
cccaagctgaaggcggtgttcgactgcgttgtgaactctctgaagaacgttcttaacatc
ctcatcgtctacatgctcttcatgttcatctttgctgttattgccgtacagctctttaag
ggtaaatttttctactgcaccgacgagtccaagggtctggagaaagactgcaggggtcaa
tttctggactacgacagggatgacgtggcagctcagcccagagagtggaggaagtacgag
tttcactacgataacgttctctgggccttccttacgctcttcactgtgtccacgggggag
ggatggccactggtcctgaagcactctgtagacgccacatatgaggaccagggccccagc
ccaggcttccgcatggagacatccatcttttatgtggtctacttcgtggtgtttcccttc
ttctttgtcaacatatttgtggctttgatcatcatcaccttccaggagcagggagacaag
gccatgtccgagtgcagcctggagaagaatgagagggcgtgtattgactttgccatcaac
gccaagccgctgacgagatacatgccagagaacaagcagtccttccagtacagaatgtgg
aagtttgtggtgtcgtcaccgtttgagtacgccatcatgactttaatcgccctcaacaca
gtcgtgctgatgatgaagttctacggagctccagacctttatgagtccatgctgaaatac
ttaaacatcgtcttcacagccctcttcacactggagtgcatcctcaagattattgccttc
ggtccactgaactacctgaaagcggcctggaatgtgtttgactttgtgactgtgctggga
agcatcacagacatcttggtcacagagattaagacggacaaaatgatcaacctgagtttc
ctgaggctgttcagagcggctcgtctcatcaagctgctgcggcagggctacaccatccgt
atcctgctgtggacctttgttcagtccttcaaggctctaccatatgtctgcctgctcatt
gccatgctgttcttcatctatgccatcattggaatgcaggtctttggcaacatcgagctg
aatgaggagaccgcaataaatcaccacaacaacttccagacctttttccaggccttgact
cttcttttcaggagtgcaacaggcgaggcgtggcacgagatcatgttggcgtgtctcagt
aaccggccgtgtgataagctctcaggaaccgtggggaaggagtgtggaagcgaatttgcc
tacttctactttgtctccttcatctttctctgctccttcctgatgttgaacctgtttgtc
gctgtcatcatggacaactttgagtatctgacaagggacgcctccattctggggcctcat
caccttgatgaattcatccgcgtgtgggcagagtatgaccctgctgcctgcgggaggata
tgctatcaggatatgtacaaattgttgcgttttatctcgccgcccctgggcctagggaag
aagtgccctaacagggtggcttataagcgattggtgaagatgaacatgcccatcggggct
gacaataccgtgcatttcacctccacgctgatggccttgattcgcacagccctggagatc
aaactggcatctggggtcctggcgcagcatttgtgtgacgctgacctgaagagggaaata
aaccgagtctggcccaacctgtcacagaagactgtcgacctgctggtgacgccacctaaa
tacaatgagctgactgtggggaaagtctatgcagctctaatgatctttgactactataag
cagacctgtgctaagagactccagcagcagcattctacagggggacctcagagtaaactt
ggggcgttgttccgacctatgctgcccctcactcaaataccagaagtagaaccaacggtc
tgcagccccaaacagcccctcccacctccgcctgagccagaagccaagccagagctgctg
cccaccacaaccatcatctctgttgacagggacacaatactaaacaagaagagtaccata
aaacattcccagtccggagatgtttcacagtcagcgcaacagaggcccaaaggccgaagg
aaactccagagaggacagtcagaggatgtgccatattccaccagacctcaggaatttgtt
gaactgaagcaggtggagaatatttcagacacagagggatatccaatcctggagggccac
tgcagagcggcttcactgccccgacttaatgcagagtactaccggagccaccctcgcaac
gcccctgggacccacctggcacctattgtagacctcagtcccatcaagcgctcagcatcc
tcgctgacgccacagctgagggagtacgacctggaacggcccggcttggcccagtcctcg
acggggccggggcaagtccagggccaggacagagcccaccaccatcaccaccaccaccgc
tgccacagacgcagggacaaggacaaagacaagaagcagacctccctggatagagctgca
tcagtacaaccgtccagcacagttgattcgttcaccgactcttcagctgaaggtttgtcc
agagaacgagcgagggagcgggaccgcagccgggctcatgagaggaggcaccactcttca
gcaggggagaagcagcgctactactcctgtgaccgttacggcagcagggagcagtgtcac
accaggtcagccggtcccagtcgatccacgtctcccggagagggacaggacgcgggtttg
cccaaacagcatggtggcagtctggtcaaagctggccctataacgctcccctctggttcg
agcactttgggccgtggtcgcaggcagctccctcagacgcccctcacgcctcgtccagcc
gtggcctacaagaccgccatctcctcgcctctccagtcaggtgccagcaccgctacgtcg
gggcaccagactcgtttcagccgtggcctttcagagcatgaacgcttacactggggccac
gacgagtccccgataccagtgacccgcatcggttcggaccctaatttaaaccagcagcca
caggttgcttctcaacatggcctccttgaagaggacttccaggacactgtgaacggccag
ggcgggggacgctctgccagaatcgctgcctcaacaacagcctcagcttcacacggacct
gctgctgtgcctgtcacggcggccgccacgcatggtcgggcagggggggtgcccaacggc
taccacttcaccctcggagtcaactctgcgtctgggcctgggagccgaggaacaggaagt
ctcagggagagggaggaagaggactggtgctaa
DBGET
integrated database retrieval system
