Etheostoma cragini (Arkansas darter): 117959044
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Entry
117959044 CDS
T07493
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117959044 (chd1)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117959044 (chd1)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117959044 (chd1)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117959044 (chd1)
SLIK complex
117959044 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CHD1-like_C
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
117959044
NCBI-ProteinID:
XP_034751779
LinkDB
All DBs
Position
16:706173..741277
Genome browser
AA seq
1787 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASGSASGSSSSSSSSSSQSGSSDSGSGSDS
GSASDSDTEKSKQKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQQQKRQSS
SNSGSDEDSSSSDGSDSSSGSKKRRNSGSSDSGSGSGSGSGSGSDSSAEDNSDETASDYE
PSHKIKSRKPPTKMNFRNGKKSSNQKKKSQKCSSSDDEDENYKKAASAGPRRQATVNVSY
KEDEELKTDSDDLVEVLGEDVPQPEEDEFETLERVMDCRIGRKRATGSITTVYAVEADGD
PNANFNPNKEAGDIQYLIKWKNWAHIHNTWETEETLKLQNVRGMKKLDNFKKKESDKKRW
LKAASPEDIEYFNCQQEMMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECS
WEDGALIGKKFQKCIDDYMCRNQSKTIPSRDCKVLKQRPRFVPMKKQPTYIGGDGLELRD
YQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQLWAPLMNVVVYLGDISSRNMIRTHEWMHVHSKRLKLNIILTTYEILLKDKSFL
GSVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFHSWELFEEAHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQK
QYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFFSRAEALQHL
VRCSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKGRQFLFQRLDGSIKGEMR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KRQVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSAPFNKE
ELSSILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVAN
FSMMDEEEIDIDSERSLRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFN
ASQGRQSRNRRYSGSESDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGG
PLERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKTSGGRSGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSLL
IGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEA
QKQAGTANSRKRKPRSKKSKTLKPSKTEEVLKSTSSDPPSDKRTDDEDDIEEEKEAAPVK
TASRRVRADRATLKEEDEDEEPEQEEVSSSGEGEVKEKEMKKEKEESWDIKETKDTKETK
EKKEIKPLEAVHKPDESLEKNEVKPEVRTKKASDVPVHITASGENVPLSEESEELDQRTF
SVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQW
RKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSTTTHSYKHADIERLKDN
SHQDDSSRDSYSSDRRYHESSGSRERHSSESHRKTTGGESRKRPYSSFSNGKDHRDRDHY
RPDSRDRDRDRQDRYYNDGKHRKLEEFRSSRDHRLDMKDHSHSDHRSSYRYHSDWQAEQR
ASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgaagtgaggatgaaagtgtaagcaacagtagtggagaatcaagtaattct
gatgatgaatccggttctggatccggctctgcatcagggtctgcctcgggctccagttcc
agctcctcaagcagcagcagccaatcagggagcagcgactcaggtagtggctcagactct
ggcagcgcatcagactctgacacagagaagtccaagcagaagatggaaccgccaaacaag
tcaaacatagacggagctgagttctggaagtccaacccaagtatccttgcagtgcaaaga
tctgctatgctcaggaaacagcagcagcagcagcagcagcagcaaaagagacaaagctcc
tcaaatagtggatcggatgaggactcgtcaagtagcgacggatccgactcatcaagtgga
tccaaaaaaagaagaaattcaggctcttctgactccgggtcaggttctggatctgggagt
ggttctggatcagactcatcagcggaggacaacagtgacgaaacggcatcagactacgag
cccagtcacaaaatcaaaagcagaaagcctccaaccaagatgaattttcggaatgggaag
aaaagcagcaaccagaagaagaaatcccagaagtgttcctcttctgacgatgaggatgag
aactacaagaaagcggcgtctgcggggcctcggcggcaggccaccgtcaacgtcagctac
aaggaggacgaggagctgaagacagattcagacgacctggtggaggtcctgggcgaagat
gtcccccagcctgaggaagatgagtttgaaacactggagagagtgatggactgcaggata
ggaagaaaaagagccacaggaagtataaccactgtatacgctgtagaagcagacggggac
cccaatgccaacttcaatcccaacaaagaggctggtgatatccagtatctgataaagtgg
aagaactgggcccatatccacaacacttgggagacagaggaaacacttaagctacagaac
gtcaggggcatgaagaaactagacaatttcaagaagaaggaatcggataaaaagagatgg
ttaaaggcggcctcaccagaggatatcgagtatttcaactgtcagcaagaaatgatggat
gacctgcactctcagtaccagcttgttgagcgaatcataggacattcaaatcagaagtca
gcggccggttacccagactacctgtgcaagtggcagggtttgccatactcggagtgtagc
tgggaagatggggctctaatcggcaaaaagttccagaaatgcatcgacgactacatgtgc
agaaaccagtccaagaccattccatccagggactgcaaggtgctcaaacagagacccagg
tttgtgcctatgaagaagcagccaacgtacataggaggtgatggactggagctccgagac
taccagttggacagtttgaactggatggcccactcctggtgcaaaggcaacagttgcatc
ctggctgacgagatgggtttaggcaagaccatccagacaattagcttcctcaactacctg
tttcatgagcaccagctgtatggacccttcctgctggttgtgcccctctctacactaacc
tcctggcagagagaaatccagctctgggcccctctgatgaatgttgtggtctacctggga
gacatcagcagcaggaacatgatcaggacacatgagtggatgcatgtccacagcaagaga
ctgaaacttaacatcatcctcacaacatatgagattctcctcaaagacaagtcattttta
ggcagtgttaactgggccttcatcggtgtggatgaggcgcacagactgaagaatgatgac
tccctcctgtacaagaccatgatggacttcaagtccaatcacaggcttctgatcacagga
acgccactgcagaactccctgaaagagctctggtccttgctgcacttcattatgcccgag
aagtttcactcttgggagctgtttgaggaggcgcatggtaaaggcagggactcaggctac
accagtctgcacaaagagctggaaccttttttactgcgcagagtcaagaaggatgtggag
aaatctcttcctgccaaagtggagcagatcctccgagtggagatgagtgctatccagaaa
cagtattacaaatggatcctgaccagaaactacaaggctctgagtaaaggtaccaaaggc
agcacgtcgggcttcctgaacatcatgatggagctgaagaagtgttgtaaccactgttac
cttatcaagcccccagaggacaacgagttcttcagcagagctgaagccttgcagcatctg
gtccgctgcagtgggaagctggttcttttggacaaactactggtgcgtttaaaggagcga
ggacacagagttctcatcttctcccagatggtacggatgctggatatcctggctgattac
ctgaagggccgtcagttcctctttcagagattagatggctccatcaaaggggagatgaga
aagcaggcgttggatcattttaatgctgagggctcagaggatttctgcttcttgttatcg
acgcgtgcaggcggtcttggtatcaatctggcatcagctgacacagtggtcatctttgac
tcggactggaacccccagaatgatctccaggcccaggccagagcccacaggatcggtcag
aaaagacaggtgaatatctaccgtctggtgacaaagagctcagtggaggaggaaatcatt
gagagggccaaaaagaaaatggtgctggaccaccttgtcattcagaggatggacactaca
gggaagactgtcctccatacgggctctgctccttccagttcagcaccattcaacaaggag
gagctatcttccatcctcaagtttggtgccgaggagctttttaaagagccagagggtgag
gagcaggagcctcaggaaatggacattgatgagatcctcaaaagagctgagaccagggag
aatgaccctggaccctccacagtgggagaagaactgctgtctcagttcaaggtagccaac
ttttctatgatggatgaggaggaaatagacattgactcggagcgtagtctgcggagttgg
gacgacatcattcccgaggagcagaggaggaggatggaggaggaagagaggcagaaggag
ctggaggaaatctacttgctgccacgcatgaggaattgtgccaaacagatcagctttaat
gccagtcaaggcaggcagagcaggaacaggaggtactccgggtctgagagtgactcccca
tcagaccggaagaggccaaagaaacgtggacggcctcggaccattccacgagaaaatatt
aagggcttcagcgatgctgagatccggaggtttgtcaagagttacaaaaaatttggagga
ccactggaaaggttggatgctatagcgcgtgatgccgaacttgtggataagtctgaacac
gacctgaaacgcctggcagagaccgttcacaacggctgtgtgagaacactacgagaaaac
ccctgcggaccagagaaaacgtcaggaggcagaagtgggaaggtgaagggccctacgttt
aggatctctggagttcaggtgaacgccaagctggttatctcccatgaggaagagctggct
ccactccacaaggccattcctgctgaccccgaggaaagaaagaagtatatgattccatgc
cactcgaaggcagcacacttcgacattgagtgggggaaggaggacgactccagcctcctt
ataggaatctatgagtatggttacggcagctgggagatgatcaagatggatccagacctc
aacctcacacacaagctcctaccggacgacccagacaagaagccgcaagccaaacagctc
cagacccgagcagactacctcatcaagttgctaagcaaggacctggccaaaaaagaagcc
cagaaacaagcagggacagccaactcacgaaagaggaaaccaagaagtaaaaagagcaaa
actctgaagccatcaaagaccgaagaggtgctgaagagcacatcctccgatcccccatca
gacaagaggacagacgatgaagacgacattgaggaagaaaaggaggcggcgcccgtgaag
acagcgagcagacgggtccgagcagacagggcgacgctgaaggaggaggacgaagacgag
gagcctgagcaggaggaagtttcttcatcaggggagggggaggttaaagaaaaagagatg
aaaaaagagaaggaggaaagttgggacatcaaagagacaaaggacacaaaggagacaaaa
gagaaaaaagaaatcaagcctctggaggcagtacacaaaccggacgagagcctggaaaag
aatgaagtaaagcctgaggtgcgaacaaagaaagcctctgatgtgccagtacatattaca
gcaagtggagagaatgtgccattatcggaggagtctgaggaactggaccagaggaccttc
agtgtgtgtaaagagaggatgcggccggtgaaagcagccctgaagcagctggacaggccg
gagaaagggctgtcggagcgtgagcagctcgaacacaccagacagtgtctcataaagatc
ggagaccacatcaccgagtgtctcaaggagtattcaaaccctgaacagatcaaacagtgg
agaaaaaacttgtggatatttgtttccaaattcactgagtttgacgccaggaaactacat
aaactctataagcatgcaatcaagaaaagacaagagaacgcccaggcaatggagcagaac
acgagaagtacaaccacccacagctacaagcacgcagacatcgaaaggctgaaggacaac
tctcaccaggacgacagcagcagggacagctacagctcggaccggcggtaccatgagagc
agcggcagcagggagagacacagctcggagtcccacaggaagaccacagggggggagtcc
cggaaacggccgtactcctccttcagcaacggcaaagaccacagagacagagaccactac
agaccagacagcagggacagggacagagacagacaggacagatactacaacgacgggaag
cacaggaagctggaagagttccgctccagcagagaccatcggctggacatgaaggaccac
tcccactcggaccaccgctcgtcctaccgctaccactcggactggcaggcggagcagcgg
gcctcagccagcgggccccgctcgccccgggaccagcgctcgccctacgactcgcgctcg
cccatgggacaccgctcgcctttcgactactcgtcggaccacaagagcacaccggagcag
atctggagcagccgcaagacataa
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integrated database retrieval system
