Etheostoma cragini (Arkansas darter): 117959268
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Entry
117959268 CDS
T07493
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor
KO
K20053
very low-density lipoprotein receptor
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117959268 (vldlr)
Membrane trafficking [BR:
ecra04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117959268 (vldlr)
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
Motif
Other DBs
NCBI-GeneID:
117959268
NCBI-ProteinID:
XP_034752175
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All DBs
Position
16:1695601..1737261
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AA seq
860 aa
AA seq
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MQPASAQLATVRTLQEMFTSTPGILMLSMLICLQHCINVHGTKTECEASQFQCGNGRCIP
SVWQCDGDEDCADGSDENSCVRKTCAVVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEI
CHMRTCRVNEFSCGAGSTQCIPIFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASGRCI
SRNFVCNGEDDCGDGSDEVECAPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESPS
RCGRHPTPPAKCSSSEMQCRSGECIHKKWRCDGDPDCKDGSDEANCPVRSCVLDQFKCDD
GSCILGSRQCNGIRDCADGSDEVNCKNMTQCNGPEKFKCRSGECIEMSKVCNKARDCPDW
SDEPIKECNLNECLMNNGGCSHICKDMVIGFECDCTPGLQLIDHKTCGDINECVNPGICS
QICINLKGGYKCECHNGYQMDPTTGVCKAVGKEPSLIFTNRRDIRRLGLERKEYTQIVEQ
QRNAVALDADYNQQIIFWADLGQRAIYSTLLDKRGDVGVHSKVIDNVQTPVGIAVDWIYK
NLYWSDLGTKTISVANFNGTKQKVLFNRGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSG
MNGVDRQVLVTTDIQWPNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSLDYLA
HPFALTVFEDRVFWTDGENQAIFGANKFSGSDVVTLASNLNDPQDIIVYHELIQLSGPNW
CAEKGANGGCSYMCLPAPQINKHSPKYTCVCPEGQELAADGLRCRPEANVSTSIQVNSPA
RGSAAAWAILPVLLLAMAAAGGYLMWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDITRHG
ANVGHTYPAISIVSTDDDIS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccgcgagcgcccagctagcaaccgtacgtacactgcaagagatgttcacgtcc
acaccggggatcctcatgctgtccatgctaatatgtctccagcactgcattaacgtccac
ggtactaagacggaatgtgaggccagccagtttcagtgtggaaacggtcgctgcatcccg
tccgtctggcagtgtgacggagacgaggactgcgccgatggaagtgacgagaactcctgt
gttagaaagacttgtgcggtggtggactttgtttgtcgcaatggccaatgtgtcccgaag
cgctggcactgtgatggggagcctgactgcgaggatgggtccgacgaaagcgtagaaatc
tgccacatgaggacatgtcgtgtgaacgagtttagctgcggagcaggctccactcagtgt
atccccatcttctggaaatgtgacggagagaaggactgtgacaatggagaggacgaggtc
aactgcggtaacatcacctgtgctccaaatgagttcacgtgcgccagcggccgctgcatc
tcccggaactttgtctgtaatggtgaggacgactgtggcgacggctcagatgaggtggag
tgcgcaccgtcgtcctgcggccccagtgagttccagtgtggaaactcatcgtgcatcccg
gccagctgggtgtgtgacgacgacgttgactgccaggaccagtcagatgagtctccgtct
cgttgcggccgtcacccgacgccgcctgccaagtgttcatccagtgagatgcagtgtcgt
tcaggagagtgtattcacaagaagtggaggtgtgacggagacccagattgcaaggacggc
agcgacgaagccaactgtcctgtacgctcgtgtgttctggatcagttcaaatgtgatgac
ggaagctgtatcctgggcagcagacagtgtaacggcatcagagactgcgccgatggatca
gatgaagtcaactgcaaaaacatgactcagtgtaatggaccagagaagttcaagtgtcgc
agcggtgagtgtatcgagatgagcaaagtgtgcaacaaggcccgagactgtcccgactgg
agcgacgaacccatcaaggaatgcaatctaaacgagtgtctcatgaacaatggcggctgc
tctcacatctgcaaagacatggtgatcggcttcgagtgtgactgcacgccgggacttcag
ctcatagaccacaagacctgtggagacatcaatgagtgtgtgaaccccggcatctgcagt
cagatctgcatcaacttgaagggtggatacaagtgtgaatgccacaacggctaccagatg
gatccgaccaccggagtctgcaaggctgttggtaaggagccttccctgatcttcactaat
cgacgtgacatccgtcgcctgggtctggagaggaaggagtacactcagattgtagagcag
cagaggaatgcagtggctctggatgcagactataaccagcagattatcttctgggctgac
ctgggccagagggcaatttatagcactctgctggacaaacgaggggatgtcggcgtccac
agcaaagtgattgacaacgtccagactcctgtgggaatcgccgtggactggatctataag
aacttgtactggtctgatcttggcaccaaaaccatttctgtagccaacttcaacggaacc
aagcagaaagttctattcaacagaggcctcaaagaaccggcatccatcgctgtagatccg
ctgtcggggttcctgtactggtctgactggggcgagccagcaaagattgagaaatctggt
atgaacggagtggacagacaggttctggtgacgacagacatccagtggcctaatggaatc
accctggatctgatcaaaggccggttgtactgggttgactctaagctgcatatgctctgt
agtgttgacctgaatggagacaacagaaagaaagtactccagtctctggactacctggct
catccctttgctctgacagtttttgaggatcgagtcttctggacagatggcgaaaatcaa
gccatctttggcgcaaacaagttctcgggctcagacgtggtgacgctggccagcaacctg
aatgacccccaagacatcatagtgtaccatgagctgatccagctgtcaggtcctaactgg
tgtgcagagaaaggtgcaaacggaggttgtagctacatgtgtctgcccgcgccacaaatc
aacaaacactcccccaaatacacctgtgtgtgtccagagggacaggagctggctgctgac
ggcttacgctgcagacctgaagccaatgtgagcacatccatccaggtgaactccccagcc
agagggtctgctgctgcctgggccatacttcctgtcttactgctggcgatggcagcggct
ggcggctacctgatgtggagaaactggcagctgaggaaccagaagagcatgaactttgac
aaccccgtctacctgaagaccacagaagaagacctcaacattgacatcacccggcacggt
gcaaacgtgggtcacacctaccctgcgatctcgatagtgagcacagatgacgatatatca
tga
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