Etheostoma cragini (Arkansas darter): 117959425
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Entry
117959425 CDS
T07493
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117959425 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117959425 (mtrex)
03041 Spliceosome [BR:
ecra03041
]
117959425 (mtrex)
03009 Ribosome biogenesis [BR:
ecra03009
]
117959425 (mtrex)
03016 Transfer RNA biogenesis [BR:
ecra03016
]
117959425 (mtrex)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117959425 (mtrex)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117959425 (mtrex)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117959425 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
117959425 (mtrex)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
Pre-60S particles
Helicases
117959425 (mtrex)
Transfer RNA biogenesis [BR:
ecra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117959425 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
117959425
NCBI-ProteinID:
XP_034752465
LinkDB
All DBs
Position
16:complement(17903003..17923333)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDEEQQTTTSKNIPASLTPEIGKVISKNGTDKDAGPSAAVKREADSDG
GEEMVFGKKPRHETVSANDLNLAEFMPQVKVEQVDTVEGCSHEVALPMSDDYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPSGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRK
GGTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KNYEEQYHSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFCKKSNVKTSTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPMHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcttttggagacggtttgttcagcgtgtttgacgaagaacaacaaactacc
acaagcaaaaatatacctgcttccctgacaccagaaatagggaaagttatatctaaaaat
ggcaccgacaaagatgctggtccatctgccgcagtcaagagagaggcagacagtgacggt
ggagaggagatggtgtttgggaagaaacctcgacatgagacagtctctgctaatgaccta
aatcttgcagaatttatgccccaagtgaaggtggagcaagtcgacactgtggaaggatgc
tcacacgaggtggctcttcctatgagtgatgattacaagcccctaaaaccacgagtgggg
aaagcagccaaggagtacccttttgttcttgacccgttccagcgtgaggccatcttatgt
atcgacaacaacgagtctgtgcttgtctctgctcacacctctgctggcaagactgtctgt
gcagaatatgccattgcactggcccttagagaaaagcagagagtgatcttcaccagcccc
atcaaagccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtggga
ctgatgactggtgacgtcaccataaaccccactgcatcctgccttgtcatgacaacagag
atcctgaggagcatgctctacagaggctctgagatcatgagggaagtggcgtgggtcgtc
tttgacgagatccattacatgagagatgcagagcgtggtgtggtatgggaggagaccatc
attcttcttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccagg
cagtttgctgagtggatttgtcacctacataagcagccatgccatgtagtctacacagac
taccgtcccactccactgcaacactacatcttcccatcagggggcgatggactccaccta
gttgttgatgagaatggagacttcagagaggataatttcaacacggctatgcaggtgctg
agagatgcaggggattcagggggcagtggagggggcaagtgggacccgagaggacggaaa
ggaggcactagaggtccatccagcgtgttcaagattgtaaagatgatcatggagaggaac
ttccagcctgttatcattttcagtttcagcaagaaagaatgtgaggcctacgctctacag
gtagccaaactggactttaacagagatgatgagaaacgtctggtggaggaagtcttcaac
aacgcagtggactgtctttctgacgaagacaagaaactccctcaggtggagcatgtgctg
ccgttgttgaagagggggataggaatccatcacggaggcctgctgccgatcctgaaagag
accatagagatccttttctctgaaggcctgatcaaggccctgtttgctacagagacattt
gccatgggcatcaacatgccggctcgcactgtgctcttcaccagcgcacgtaaatttgat
ggcaagaatcaccgctttattacatcaggtgaatacatccagatgtccgggcgagccggt
aggagaggaatggacgacaggggaatcgttattttcatggtggacgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagccgaccctttgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatgctg
gagaagtctttctaccagttccaacactacagggctttgcctggtgttgtagagaaaatt
aaaaattacgaggagcagtaccacagcattgagattcccaatgaagagggtgtagtcact
tactttaaaatcagacagcagctggccaaactgggtaaagagatacaagagttcacccac
aaacccaaatactgcttgcctttcttgcagcctggacgacttgtcaaggtaaaaaatgaa
gatgctgactttggctggggagttgttgtaaacttttgcaagaagtccaacgtgaagacc
agtacagactctgagccgctctatgtggtggaggttttggtccactgtagtaaggacagt
gtaaaagatgctgcgactgaggcggctaaacctgctgctccaggggagactggagaaatg
caggtggttccagtgatgctccatctcctgacttccatcagctctgttcgcctttacatc
cccaaagacctgaggccctttgacaaccgacagctcatgctcaagtctatacaggaggtg
cagaaacgtttcccagatggtgtgccactgctcgaccccatagatgacatgggcatcaag
gaccctgcactgaagaaagttattcagaaagtggaggcctttgagcaccgcatgtactcc
caccccatgcacagtgaccccaacttggaatctgtgtattctctctgtgagaagaaagct
ctgatcgcagcagacgtacggacggccaaacgagagctgaagaaagctcggaccgtcctg
cagatggacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagtccg
tctgatgttatcgagatgaaaggacgggtggcctgtgaaattagcagtgccgacgagctc
ttgctgacggagatggtgttcaacggtctcttcaatgatctgacggtcgaacaagccacc
gccctgctgtcctgctttgtcttccaggagaatgccagtgagatgccaaaactgactgaa
caactagcagctcctttgagacaaatgcaggagtgtgcaaagcgcatagccaaggtttca
gccgacgccaagctggaggtggacgaagagacttatctaaaccagttcaagcctcacctg
atggatgtggtgtacgcttgggctaacggggccacgtttgctcaaatctgcaagatgact
gacgtctttgaagggagcatcattcgctgcatgcgtcgcctggaagaagtcctgagacaa
atgtgttctgcagccaaggccataggcaacactgagctggagaacaagtttgctgaagga
ataacaaagataaagagagacattgtatttgctgccagtctctacctataa
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