Etheostoma cragini (Arkansas darter): 117959807
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Entry
117959807 CDS
T07493
Symbol
tnpo1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117959807 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117959807 (tnpo1)
03009 Ribosome biogenesis [BR:
ecra03009
]
117959807 (tnpo1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117959807 (tnpo1)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117959807 (tnpo1)
Pre-60S particles
117959807 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_2
Arm
TOR1L1_N
Vac14_Fab1_bd
Cnd1
IBN_N
HEAT_EF3_N
PDS5
Adaptin_N
MMS19_C
CEP104-like_TOG
HEAT_Maestro
UNC45-central
Dopey_N
TPR_TTI1_C
INTS7_N
HEAT_DAAF5
RTP1_C1
Motif
Other DBs
NCBI-GeneID:
117959807
NCBI-ProteinID:
XP_034752987
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All DBs
Position
16:complement(20576723..20606494)
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AA seq
891 aa
AA seq
DB search
MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCQLLDSEDYNTCEGAFGALQKICEDSAEILDSDILDRPLNIMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDPFIENLFALATDEEPEVRKNVCRALV
MLLEVRLDRLLPHMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKEVLCGHLSQL
TPVLVNGMKYSEIDIILLKGDIEEDEAIPDNEQDIRPRFHRSRTVAQQHEGDGIEDDEDD
DDELDDDDDTISDWNLRKCSAAALDVLANVFRDDLLLHILPLLKELLFHPEWVVKESGIL
VLGAIAEGCMQGMIPYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPPDIYLK
PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAFILDTLVFAFSKYQHKNLL
ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNQLKDEDKDLFPLLECLSSVATALQS
GFLPYCEPVYQRCVNLVQKTLAQAMLYQSQPDQYEAPDKDFMIVALDLLSGLAEGLGGTI
EELVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGSNLNP
ELISVCNNATWAIGEISIQMGSEMQPYIAMVLHQLVEIINRPNTPKTLLENTAITIGRLG
YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCDAV
ASWVNPKDDLRDMFYKILHGFKNQVGEDNWSRFSDQFPMPLKERLATFYGV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtgagtggaagccagacgagcaaggacttcaacaaattttacagctgctgaaa
gagtctcagtcgccagatacgtccacacagagatccgtccagcaaagacttgagcagttg
aaccaatatccagactttaacaactatttgatatttgttttgacaaagttaaaatcagaa
gatgaaccaacacggtccctaagtgggctgatactgaagaacaatgttaaagcccactat
cagaacttccctaatggcgtgtctgatttcatcaagagcgagtgcctccaaaacatcgga
gactcttcgcccctcatccgggccaccgtgggtatcctcatcaccaccatcgcctccaag
ggagagttacaaaactggccggagcttctgcctaaactctgccagctgttggattccgag
gactacaacacgtgtgagggagcttttggagccctgcagaagatctgtgaggactccgct
gagatcctggacagtgacatattggatcgtcctctgaacatcatgatccccaagttcttg
cagttttttaagcacagcagtcctaagattaggtctcatgccattgcctgcgttaatcag
ttcatcatcagcaggactcaggctctcatgctgcacattgaccctttcattgagaacttg
tttgcactggcgacggatgaggaaccagaagtgaggaagaatgtgtgcagagctctagtc
atgctgctagaagttcgcctggaccgtctcctgccacacatgcacaacatcatagagtac
atgctacagaggactcaggaccaagatgaaaatgttgccttggaagcctgtgagttctgg
cttactctggcggagcagcctgtgtgtaaggaagtgctctgtggacacctctcccagctt
actccagtgcttgtcaatgggatgaagtactctgagattgacatcatcctgctcaagggg
gacatcgaggaagacgaggccattccggacaacgagcaagacatcaggccgcgcttccat
cgctcccgcacagttgcccagcagcatgagggcgatgggatcgaggacgacgaagatgac
gatgatgaactggatgatgacgatgatactatctctgattggaacctgcgtaagtgttca
gctgcagcgttggacgtgttggccaacgtgttcagggacgatctgttgctgcacattctg
cccttactcaaagagctgcttttccatccggagtgggtggttaaagagtctggtatccta
gtgctgggggctatagctgaaggctgcatgcagggcatgatcccatacctgcccgagctc
attccccatctggtgcagtgtttgtctgacaagaaggccctggtgcgttcaatcacctgc
tggacactcagccgctatgcccactgggttgtcagtcagccgccggatatttacctgaag
cctctaatgacagagctgctcaaacgtattttggatagcaacaagcgtgtgcaagaggct
gcttgcagtgcctttgccactttggaggaggaggcgtgtacagagctggttccctacctg
gcattcatcctggacacactggtgttcgctttcagcaagtaccagcacaagaatctgctg
attctttacgacgccataggaacactcgcagactcagtggggcaccatctcaataaaccg
gagtacatccagatgttgatgcctccactgatccagaaatggaaccagctgaaagatgaa
gacaaagatctcttcccgttattagaatgtctgtcgtctgtagccacagccctgcagagt
ggcttcctgccctactgtgagcctgtgtaccaacgctgtgtcaacctggtgcagaagacc
ctcgctcaagccatgctttatcagtcacagccagaccagtatgaggcccctgacaaagac
ttcatgatcgtggctttggatcttctcagtggactggctgagggtttgggaggcaccatt
gaggagctggttgctcgtagcaatatcctcaccctcatgtaccagtgcatgcaggacaaa
atgccggaagtgcgtcaaagttcttttgctttgcttggcgatttaaccaaggcttgtttc
caacacgtcaaaccatgcattgctgatttcatgcccatactgggtagtaatttaaaccca
gaactaatatcagtgtgcaacaatgcaacatgggcaattggagagatatctatacaaatg
gggtctgagatgcagccgtacattgccatggtgctgcaccagctggtggagatcataaac
aggcccaataccccaaagactctactggagaacacagcaataacaattggtcgtcttggt
tacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgcacc
tctctacgaaatattagagacaatgaggagaaagactctgcgttcagaggaatttgcact
atgatcagtgtgaatccgggaggtgtagtgcaggattttatattcttctgtgacgcagtg
gcctcctgggtaaatccaaaggacgacctcagagacatgttctacaagatccttcacggg
tttaagaaccaggtgggagaggacaactggagccgcttctcagatcagttccccatgcca
ctgaaggaacggctggcgacattttacggggtgtaa
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