Etheostoma cragini (Arkansas darter): 117960128
Help
Entry
117960128 CDS
T07493
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117960128 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117960128 (patl1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117960128 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
117960128 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117960128
NCBI-ProteinID:
XP_034753659
LinkDB
All DBs
Position
2:complement(2849296..2874847)
Genome browser
AA seq
830 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDDGLIQEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAQLDERDGL
EVGLGLGGEMGGESNSGGAKDSSSTQLPSSTDHLHQLSSIPSLKFFSSSSGPPPPDVEDR
GGEGDLAESLARLILDADPAIAGVGAAERPGPSPSSTGSSLSALQGLDLPRVLPQPSILH
PTQPHHHLQHQLPPGPSTSGLPPGPSPSSLLSYQQQQHLLRRGTTPMAQMNSHSIWENSM
GFGPVSITPGLVTHMEDSPLMSIIKEVGLPKRPPQGRNDEGRDLSERVPPPRSSSPVIGS
PPVRAVPIGTPPKQPMSHALNNQIHHPTAVHVRAPVQHRYPPPFPERVSPNTLLNIANSP
LCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPHGGPAPHLLPGGGFRPFFGGPPPPLGHRM
GPPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQSRGGDRGRTGMDRRSRDPYSNLMTQ
KEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKV
EHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKM
YSLMLEVQDFEKRFVQVPEEDREALLEQHKTNTLQLCNSLREKEWDDRVSDEQCVMIMSV
RKGKRLISRLLPFLPSTQAAAIVMAISRNLPALAKKDKQDQVLCWLVEPISAVIQSLSSS
ALTDLLQELQGNEGQLAKVLHNKFGLTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFS
VTRELLSVPTSSLSSPLFTPPNLLSLFSRYVDRQRLELLQDKLQISSLSR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtccctggatgaagattgtacgctggaggaggaagacgacggactg
atacaggaggaagatgaaattgatcagttcaacgatgacacctttggagctggggccatt
gatgacgactggcaggaggaacacaaacgcctcgctcagcttgatgagagggacggacta
gaagtgggactggggttaggaggggagatgggaggagaatcaaattcaggaggagctaag
gactcatcttccacccagcttccttcctctacggaccatctccaccagttatcttccatc
ccttcactcaaattcttctcgtcttcctctggaccccctccaccagatgtggaggatcga
ggaggggaaggtgacttggctgagtccctggccaggctcatcctggatgctgaccctgcc
attgctggggtcggagcagctgagagacctggtccatcccccagctctacaggatccagc
ctgtctgctctgcagggcctagacttacccagagtcctgccccagccctccatcctgcat
cccactcaaccacaccatcacctgcagcaccagctgcctcctgggccgtctacctcaggc
cttcctcctggcccttctccctcatctttgctcagttaccaacagcagcagcacttgctg
cgcagagggactactcctatggcccagatgaactctcacagtatctgggagaacagtatg
ggctttggaccggtcagtatcacccccggactggttacacacatggaggatagtccacta
atgtctattatcaaggaggtgggccttcctaaacgacctcctcaaggcaggaatgatgaa
ggacgggatttgtcagaaagggtcccacctccacgctcttcttcgcctgttattggctcc
cctccggtgagggcagtgcctattgggacgccacccaaacagcctatgagccatgccctg
aataatcagattcaccaccccacggcggttcatgtgagagccccagtccagcacagatat
cctcctccttttcctgagcgcgtgtcacccaacaccctactcaatatagctaactctcca
ctgtgtcgcggcccgttccctcctggagttggtcctgtcctgtcacagattcaacgggct
cagctgctcaactctcaggtggctggttttcctcatggtggtccagcgcctcatttgtta
ccaggtggtggttttaggccgttctttgggggccctcctcctccacttggtcatagaatg
ggtccgccaccccctcatggcccccccaaccacacgccacctatccggcacaacaccaca
caccttcacccccagcaccgccgcatgctcacccaacgcatgcagagccggggaggggac
cgtgggaggactggaatggaccggcgcagcagggacccctacagtaaccttatgactcag
aaagagaaggaatgggtaaccaaaatccagatgatgcagctgcaaagtactgacccttac
ttggatgactactactatcagaactactatgaaaagatggagaaacgtcaggaaagagag
agagacagcagcaagaaggaacacaccaccaaattgatcactccacaggtggccaaggtt
gaacacacctacagaccagttcagtttgcaggctctctcggtaagctgacggtctccagc
gtcaacaaccctcgcaagatgattgatgccgtggtgacaacccgcacagatgatgaggaa
aaaagggagaagcaggtttggaataagaggagacagatcctctacactgtggagaagatg
tacagtttgatgctggaggtacaagactttgagaaacgttttgtccaggtgccagaggag
gacagggaggctcttctcgagcagcataaaaccaacaccttgcagctgtgcaactctctg
cgggagaaagagtgggacgacagagtgagtgatgagcagtgtgtgatgatcatgtcagtg
aggaagggcaaacggctcatctccaggctcctcccttttctgccctcaacccaagctgcc
gccattgtcatggcgatttctcgcaatcttcctgccctggccaagaaggacaagcaggac
caggtgctgtgctggttagtggagccgatttctgctgtgatccagtcattgtcaagctcg
gcccttacagacttgctccaggagctacagggcaatgagggccaactggccaaagtattg
cacaacaagtttggtttgacactgctgtatctgatcctgagtgaaggagaaaggatgcaa
agttccgaccccaactgtcaactcatggacgacaatcggtggacggagttggtgttttca
gtgacgagggagttgctcagcgtgccgacctcatcactctcttctcccctcttcacccct
cccaacctgctctccctcttctcacgctacgttgatcggcagaggctggagctgttacag
gacaagctacagatctcttctttgtccagatag
DBGET
integrated database retrieval system
