Etheostoma cragini (Arkansas darter): 117960208
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Entry
117960208 CDS
T07493
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
117960208 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117960208 (ercc6)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117960208 (ercc6)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117960208 (ercc6)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
117960208 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Med21
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
117960208
NCBI-ProteinID:
XP_034753817
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All DBs
Position
17:complement(12646987..12663617)
Genome browser
AA seq
1447 aa
AA seq
DB search
MPVTLDGSEDQVPSSLSSHASAALTLGGTDEDGATGCSAICSLPENSQGSEVATAYPANI
GPGEGNNGGKRSGALLQIDRQRIQAASASSGADELQGLGVAVYDQDVLEQGVLRQVDEAI
QEASQATAKAEAEKEYHSVLDDVRSITVSLKQINKIIEQLSPYATSSKDISRKIESVKRQ
KENKEKQLKKVKAKQKRLQAVLGGEDTKRVEAELLAEDDEEEEAGPSTLGSMLMPAQETE
WEELIRKGHMTPFGTRIPQKEEKKEPRKVMLVENSAFDLYLADQAKMATERKRVPLLKKK
RGSGLSPGEAKGKNNRIVTSSKDKKMRKRIRKLQITALKAHPKARPKAEPQLPKPKRKHH
TEGEETDSEGSEYLPSDEGIDPDQEEREAIEEGFGEEDEEEYELKPYKKKSEGKGRKKVK
KKEESDEEYCPESSDEEEDVKGKDKKKKDDGDVECYKQRLRRWKRQRLRDREAKRESGEV
LTDDSDEEFDEGFKVPGFLWKKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVIC
FLAGLSYSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVMEFHTWWPPFRVAVLHETGSFT
SNKEKLIPEIASCHGILITSYSAVRNMQDTLQRFDWHYVILDEGHKIRNPNAGVTTACKQ
FRTPHRFILSGSPMQNNLKELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV
QTAFKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQSFLDSKE
VYQILNGDMQVFSGLIALRKICNHPDLFSGGPRILRGIPEDQLTEEEHFGFWKRSGKLIV
VESLLRLWFKQGHRVLLFTQSRQMLNILEVFVTENNYSYLKMDGTTPIASRQPLIARYNE
DKSIFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLL
TAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLSDPDGGQGTETSAIFA
GTGSDVKAPKKPQRPRPSHMVNHGSHTQNQTSAYLKEAGAGSRHIPALRDGNTPCSQNSP
GKPNGPTESQSTNQNGQDVEPNISPNTQYTRKHNRDRDAAKPAVRNTNSSSSHQHRDIDS
VLASPQKHREKRKHCDSADSDKHRKRKHSKGSRFEGHRISHLVKKKTFNKTESEDNETEK
KLDDYVLAKLFKKSGIHSVMQHDSIMESSNPDYVLVEAEANRVAKDALKALKVSRQQCRL
SFNRPPPPPASCLRKRFGQKNNSLLVAPSVKSVPTPSKCKDAAIVKRSVSKKPGSGAHFS
GEGAESESFSAPLSSSSLLAKMKARNYLSMPSSQREEAEEEEDGSGVPGTSSPPPPPTEH
DELLVDVRNFIAFQANVEASTQEVLEYFKPRLTEKQAPVFRELLRSICDFQRTSGQEGIW
RLKERFR
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgacgttagacggttcagaggaccaagtgccctcctctttatccagccatgcc
agtgctgcccttaccctgggagggacagacgaggatggggcgacagggtgctcagcaatc
tgctctttacctgaaaacagtcagggctccgaggttgctacagcctatcctgccaacatt
ggacctggggagggtaacaatggtggtaagaggtctggagccttgctgcagattgaccga
cagcgtattcaagcagcatctgccagttctggagcagatgaactccagggccttggtgtt
gctgtgtatgaccaggacgtccttgagcaaggtgtcctccgtcaagtggacgaggcaatc
caggaggccagtcaggctactgctaaggctgaggcggagaaggaataccactctgtactc
gatgatgtcaggtccatcacagtatctctgaaacaaatcaacaagattatcgagcagctg
tctccttacgctacctccagcaaagatatcagtaggaagattgaatctgtaaaacgacaa
aaagaaaataaggagaaacagctgaagaaggtcaaagccaaacagaagcgacttcaggcc
gttttgggaggagaggacaccaaaagggtggaagctgagcttttggcagaggatgatgaa
gaggaagaagctgggccgtccacactgggcagcatgctcatgcctgctcaagagaccgaa
tgggaggagcttatccggaagggtcacatgactccttttggaacaagaatcccgcagaag
gaggaaaaaaaggagcctcgaaaagtgatgcttgtcgagaactcggcctttgacctatac
ttggcggaccaggccaagatggctactgagaggaagagagttcctcttctaaaaaagaag
agggggtccggactcagccctggtgaggccaagggaaaaaacaacagaattgttacttct
tccaaggacaaaaaaatgaggaagcgcatacgaaagctccagataacggctttgaaagcc
catcctaaggctcgtcctaaggctgagccccagctccctaaaccaaagaggaagcatcac
actgagggagaggaaacagacagtgaggggtcagaatacctgcccagtgatgaaggcata
gatcctgaccaagaggaaagagaagccattgaggagggctttggggaggaggatgaagaa
gagtatgagttgaaaccgtacaagaaaaaaagtgaaggaaaagggaggaagaaagtaaag
aaaaaagaggagagtgatgaagaatactgccctgagagttcagatgaagaggaggatgtg
aagggtaaagacaaaaagaagaaagatgatggagatgtggagtgctacaaacagagatta
aggagatggaagcgacagcgtcttcgagacagggaggcaaagagagaaagcggcgaggtg
ctaacagatgacagtgatgaagaatttgacgagggcttcaaagtacctggcttcttgtgg
aaaaaactttacaagtatcagcagactggtgtgcggtggatgtgggaactacactgtcag
caggcagggggcatcctgggagacgagatgggactgggtaaaaccatccaggttatctgc
tttctggctggactgagctacagcaaactgaggaccagaggatcaaactacaggtatgtt
ggtttgggtccaacggtcattgtgtgcccagctacagtcatgcaccagtgggtaatggag
tttcacacctggtggcctcctttcagagtggctgttctacatgaaacgggctcgttcacg
agcaacaaggaaaagcttattccagagatagcttcctgtcatggtatcctgataacctca
tattcagctgtgaggaatatgcaagacaccttgcagcgctttgattggcactacgtcatc
ctggatgagggccataagatcaggaatccaaatgctggagttaccactgcctgcaaacag
tttcgcactccccacaggttcatcctgtcagggtctcccatgcagaacaatttaaaggag
ttgtggtctctgtttgacttcatatttcccggcaaactggggacattgcctgtcttcatg
gagcagttctctgtgccgatcaccatgggaggatacagcaatgcctcacctgtacaggtc
cagacggcatttaagtgtgcatgtgtgctgagggacaccataaatccttacctgctcaga
agaatgaaggcagacgttaaggccaacctctccttacctgacaaaaatgaacaggttctg
ttttgcagattaacagaggaccagcggcaggtgtatcagagcttcttagattccaaagag
gtctaccagatacttaacggggatatgcaggtattctcaggtttgatagcattacgtaag
atctgtaaccacccggaccttttctcgggcggcccccggatcttgaggggaatccctgaa
gaccagctgactgaggaggaacactttggcttttggaaacgctcaggcaagctgatagtg
gttgagtcactgctgcgactctggttcaagcagggccacagagtcctgctcttcactcag
tctcgacagatgttgaacatcttggaggtgtttgtgacagaaaataactactcatactta
aaaatggacggcactaccccgatagcttcccgacagcccctcatcgctcgctacaacgag
gacaaatccatttttatctttttgttgaccactaaagtcggaggtctgggagtcaatctg
actggagccaaccgagtcatcatctatgacccagactggaaccccagtaccgacacacag
gcacgggagcgagcatggaggattggtcagaagcagcaggtgacggtctacagactgctg
actgcagggaccatcgaggagaaaatctaccataggcaaatcttcaaacaatttctgacc
aaccgcgttctgaaagaccccaaacaaagacgcttcttcaagtctaacgacatctatgag
ctctttactctgtctgaccccgatggaggtcagggaacagagaccagtgccatatttgca
ggaactggttctgatgtcaaggcacccaagaaacctcagaggccaaggccatcccacatg
gtaaaccatggcagtcacacacagaaccagacctcggcctacctgaaggaagctggtgca
ggcagcagacacattcctgcattaagagatggaaacactccgtgcagtcaaaactccccg
ggaaaaccaaatggcccaacagaaagtcagagcaccaaccaaaatggccaggatgtagag
ccaaatatttcacccaatacccaatatacaagaaaacataatagagaccgggatgcagcc
aagccggcagttagaaacacaaactcatccagctctcaccaacaccgagacatcgactct
gtcctggctagcccacagaaacacagggaaaagaggaagcactgcgactcagctgactca
gacaaacataggaagcgtaaacactccaagggttctcggtttgaaggccaccgcatctct
cacttagtgaagaaaaagactttcaacaaaacggagagtgaagacaatgagacagagaag
aaattagacgattacgtcttggcaaagctcttcaagaaatctggtatacacagtgtaatg
cagcatgacagcatcatggagtcctccaaccctgactatgttcttgtggaagcagaagct
aacagggtggccaaagatgccctgaaggcgcttaaggtttctcgccagcagtgccggctg
tccttcaacagaccccctcctccacctgcaagctgtctcaggaaacggttcggacaaaag
aataattctctcctggttgcaccttctgttaaatctgtccccactccgagcaaatgcaag
gatgctgctattgtgaagaggtccgtgtcaaagaagcctggttcaggagctcatttcagt
ggggagggcgcagaaagtgagtcattctccgccccactctcctcctcctccctgctggcc
aagatgaaagcccggaattacctcagcatgccctccagccaaagagaagaagcagaagaa
gaggaggatggctccggagttccaggaacaagctcccccccacctccgcccactgagcac
gacgagctgttggtggatgtgcgcaactttatagccttccaggcgaatgtggaggcgtcc
acgcaggaagtgctggagtacttcaaaccgagattgaccgagaaacaggcgcctgtcttc
agagagctgctcaggagcatctgtgacttccagaggacttctggtcaggagggcatatgg
agactgaaggagcgctttcgctga
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