Etheostoma cragini (Arkansas darter): 117960456
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Entry
117960456 CDS
T07493
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117960456 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117960456 (herc4)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117960456 (herc4)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
HECT type E3
117960456 (herc4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
117960456
NCBI-ProteinID:
XP_034754267
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All DBs
Position
17:18344085..18357993
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AA seq
1069 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRKCDFFHGKQVCDVGCGHRHTAFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIILAVSCGEAHTLALNDKGLVFSWGQGSDGQLGLNN
FEDCVRVPRNIKSLSDVHIAQVACGYWHSHALSRGGQVFSWGQNRYGQLGLGINGQSIST
PQIIQSLQGIPFARISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDSNDRSFPALLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSANHEINPRKVFELMGNVVTQIA
CGRQHTIAFTPSREKMDSFGLGGNGQLGTRSTCNRKSPAPVKGPWVSCNSPTDTVIPTSY
SFLEFIYFLPSLHNIADSEGGIFVKRIYAGGDQSFAHYCTANKLQDLDDVRIQDPYRKIC
TLTEDIIHKWCNHSPGRLPQEISNEIDLVFSSASCLNGSFLSMSNPDHYSTSSKCSGVDM
NQARLLFHRVVQDDHPEIAQQIAASLEKNLIPRLSNSPPDIEALRLYLTLPECPLFSDRN
NYVTIAIPFAKSILSLKEAPLKVLGNWWSTFEPQVFQRLVELYKGVVVYLLQMHKMGIPS
VEQRIFTCFLDTSLRLLEILHMVSERAGHIIQYDKFYIHELDDLIDIRNDYITWIQRQMY
PMGHDGVVTLCRYPFVFDAQAKTTLLQTDAVIQMQMAVDQAQMQNFSSMFMPAVESVNPC
LILIVQRGNIVGDTMEVLRKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDP
KYGMFRYYEESRLIWFSNKTFEDIDLFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRK
PTLEDLKELMPDVGRSLQQLLDYTEDDLEETFCLNFTITEENYGATEVLELVPNGEDINV
NQSNRQDFVNAYVDYVFNTSVAPLFECFFAGFHKVCGGKVLELFQPNELQAMVIGNTNYD
WTELEKSTEYKGEYWADHPTIRLFWEVFHNLPLEKKKEFLLFLTGSDRIPILGMKSLKLV
IQPTGGGEHYLPVAHTCFNLLDLPKYKSLETLREKLLQAIDHNQGFNLA
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggtaatgcttcctacggacagttaggcttaggtgggatcgatgaagag
attgtggttgagccacgaaaatgtgatttctttcacgggaagcaagtgtgcgatgtgggg
tgtggccacagacacacagccttcctgctggaggatgggacagtgtacacctgtggctgc
aatgacctagggcagctgggacacgagaagtccagaaagaaaccagaacaggttgtggcc
ctggatgcacagatcatcctggcagtgtcatgtggagaggcccatacactcgccctgaat
gacaaagggctggttttctcatggggtcagggctcagatggccagttgggccttaataac
tttgaagattgtgttcgtgtgcctagaaacatcaagagtttgtcggatgtacacattgct
caggtagcctgtgggtattggcattcccatgcactttcaagagggggccaagtcttctcg
tggggccagaatcgatatggccaacttgggctaggaataaacggacagagcatttccacg
ccccaaatcatccagtctctgcagggcattcctttcgcccggatatcagcaggtggcgcc
cacagcttcgccctcactctctcaggagccgtgtttggttgggggcgcaacaagtttggt
cagctgggtctcaatgacagcaatgatcggtctttcccagcactgctgaagtctctcaga
tcgcagagagtgatttacatctcctgtggagaagatcacacagcagcactgaccaaggaa
ggaggtgtgtttacattcggagcgggaggatacggacaacttggacataactctgcaaat
catgaaatcaaccctaggaaagtgttcgagctcatgggaaatgtagtcacacagattgca
tgcggaaggcagcacacgattgccttcacaccctcccgtgagaagatggactcatttggg
cttggtggtaacgggcagcttggtactcgctccacatgcaacagaaaaagccccgccccc
gtcaaaggcccctgggtttcctgcaattctccaacagatacagtcatcccaacctcctat
tctttcctagaatttatatatttcttgccgtcattgcataacattgcagactcggagggg
ggcatttttgtcaagaggatttatgccggaggagaccaaagctttgctcactattgcact
gccaataaactccaggacttagatgacgtgaggatacaagatccatacagaaagatctgc
accttgactgaggatattatacacaagtggtgcaaccactcaccaggaagactgccacaa
gaaatctccaatgagattgacctcgtgttctcctcagcaagctgcctcaacggatccttt
ctgtcaatgagcaatccagatcactacagtaccagcagtaaatgttcaggggtggatatg
aaccaggctcgcctcctgtttcacagagtggtccaagacgatcaccctgagatcgctcag
cagattgctgccagtctggagaagaacctaattcccagactaagcaactctcctccagac
attgaagccctgagactctacctcactctcccagaatgccctctcttcagtgaccgaaat
aattatgtgaccattgctatcccgtttgccaaatcaatcctcagtctgaaagaggctcca
ttgaaggtgctaggaaactggtggtctacgtttgagccccaagtcttccagcggctggtt
gagttgtacaagggcgtggtggtgtatctgcttcagatgcacaagatgggcattccttcg
gtagagcagagaattttcacctgtttcctagacacgtccctccgactcctggagatcctg
cacatggtgagtgagagagcaggacacatcattcagtacgataaattctacatccatgag
ttggatgacctgatagacatcagaaatgactacatcacatggatccagaggcagatgtac
cccatgggtcatgatggtgtggtgactctgtgcaggtatccctttgtgtttgacgcccaa
gcgaagaccacactgcttcaaactgatgccgtcatacagatgcagatggcagtggaccag
gcacagatgcagaacttcagctccatgttcatgccagcggtggaatctgtcaacccgtgc
ctcatcctcatcgtccagaggggcaacattgttggagacaccatggaagtcctcaggaag
tccaagaacgttgactacaagaaaccactcaaggtgatcttcgtgggagaagaggccgtc
gatgcaggaggcgtgagaaaggagttcttcctcctgatcatgaaagagctgctggatcca
aaatatgggatgtttcgttactacgaggagtccaggctcatctggttttcaaacaagact
tttgaagacattgacttgtttaacctgattggggtcatctgtggcctggccatctacaat
ctcactatagtggagctcaacttccccgtggccctctacaagaagctcctgaagaggaag
ccaacgctagaagacctgaaagagctaatgccagatgtgggaaggagtctgcagcagtta
ctggactacacagaagatgacttggaggaaaccttctgcttgaacttcacaatcacggag
gaaaactatggggccacagaggtcttggaactagtaccaaatggcgaagacatcaatgtc
aatcaatcaaacaggcaagacttcgtcaatgcatatgtggactacgttttcaacacatca
gtggccccgctgtttgagtgcttcttcgcaggcttccacaaagtgtgtggtgggaaagtt
ctagagctgttccagccaaatgaactgcaagccatggtcattggcaacaccaactatgac
tggacagagctcgaaaagagcactgaatacaaaggggagtactgggcggaccatcccacc
atcaggctcttctgggaggtgttccacaatcttcctttagagaagaagaaagagtttctc
ttgttcctcacaggaagtgaccgcatacccattttgggcatgaaaagcctgaagttggtg
atccagccaaccggtggaggggagcattacttacctgtggcccacacctgcttcaacctg
ctggacctgcccaagtacaagagtctggaaacactccgcgagaagcttctacaggctata
gatcacaatcaaggctttaatctcgcctga
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