Etheostoma cragini (Arkansas darter): 117960476
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Entry
117960476 CDS
T07493
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04518
Integrin signaling
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117960476
04518 Integrin signaling
117960476
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117960476
09142 Cell motility
04820 Cytoskeleton in muscle cells
117960476
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecra00535
]
117960476
Proteoglycans [BR:
ecra00535
]
Extracellular matrix (ECM) proteoglycans
Others
117960476
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117960476
NCBI-ProteinID:
XP_034754285
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Position
17:complement(13975765..13989452)
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AA seq
679 aa
AA seq
DB search
MAQAPSVRGPLLVLLLQLVLICTAQRTQGPPGPPGPAGVPGIDGIDGERGEDGEEGLPGP
DGDAGKPGSSGLPGIPGNDGLTGPIGDPGPDGPPGLKGEPGTSGPRGAAGVGPDGRPGPP
GPGGLLGELGKVGPPGSMGVRGPQGPVGPTGPRGASGMQGSADLCPNSCPPGAPGHPGLP
GMKGHKGVKGDAGEPGKQGHKGEEGDQGSPGEVGSQGPVGPQGIRGAMGMMGRKGDMGAR
GLDGVPGPQGVSGATGDQGQRGVMGELGPKGETGILGLRGITGLPGPKGETGLPGVDGRE
GIPGMPGAKGGIGKAGVPGEVGLQGLPGLPGVPGLKGLSGPKGDSGQAGLPGSMGPAGKA
GERGEQGELGPIGPIGEPGAIGEQGPVGSAGKPGARGPKGDPGLPGLPGPSGLPGVKGER
GERGEGGPKGEQGSQGDEGDPGDKGDIGESGESGPKGEVGNPGEPGQRGPEGSRGQPGIE
GPPGTPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPES
GVAGLPGKPGPPGQPGQPGDNGFPGQSGARGLPGLKGPPGILGVKGPKGEMGDRGSRGPT
ARGPKGQPGPPGLPGEPGKPGYGQDGRDGQRGPPGVPGQPGVPGPPGSAGPNGYCDPSAC
NLQAGAAHQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagcccccagcgttagagggccgcttttggttctgcttctgcagcttgtcctc
atatgcaccgctcaaaggacccaaggacctcctggccctcctggacctgcaggtgttcca
ggaattgatggcattgatggggaaaggggagaagatggcgaggagggacttcctggacct
gatggagacgcagggaaacccggatcttcaggattacctggaattcctggaaatgacggt
ttgaccggccctattggagatccaggacccgacggcccccccggactgaaaggtgaacct
ggaacatctggacctcgtggagcagctggtgttgggccagatggacgccccggaccaccc
ggtcctggaggacttctgggcgaattgggaaaagttggaccgcctgggtccatgggtgtg
agagggccacagggacctgttggaccgacagggcccagaggtgcatctggaatgcaaggc
agtgccgatttgtgtccaaactcttgtccacctggggcccctggacatcctggccttcct
ggcatgaaaggccacaaaggtgtaaaaggtgatgcaggagaacctgggaaacaagggcac
aagggtgaggagggggaccagggaagtccaggggaggtcggatcccaaggaccagtgggt
cctcagggaatccgtggagccatgggaatgatgggccgcaagggagacatgggagctcga
ggtcttgatggagttccaggtccccagggtgtttcaggggcaactggggatcaaggccag
agaggcgtgatgggcgagcttgggcctaaaggtgaaacgggtattctggggctgagagga
atcacaggtcttccaggtcccaagggagagactggcttaccgggtgtagatggtcgcgag
ggtattcctgggatgcctggagcaaagggaggcattgggaaggcaggcgttcctggagag
gtcggacttcaggggcttcctggtttgcctggtgtacctggactaaaaggcttaagtggc
cctaagggagacagtggtcaagcaggcctgcctggatcaatgggacccgctgggaaagca
ggcgaacgcggagaacagggagagttgggaccaattggacctattggtgaacctggagcc
ataggagagcaaggccctgtaggttcagccggcaagccaggtgccagaggacccaaaggt
gaccccggccttcctggtctcccaggtccttctggacttcccggggtgaagggagagagg
ggagaacgtggagaaggaggacccaaaggagagcagggatcacaaggtgatgagggagac
cctggagacaaaggggatattggtgagtcaggagaatcaggacctaaaggagaggttggt
aaccctggcgagcctggccaaagaggtcccgagggaagtcgaggccagcctggaatcgag
gggccacctggcacacctggcccgcggggcatgcagggaaacaggggcccacctggagtc
agagggtcccagggccctgcgggtaaagagccaagcgatcagcacatcaaacaagtttgc
atgcgagtaatgcaagaacagctggctcagctagctgctagtttaaggaggccagagtct
ggagtagctggtttacctggaaaacctggacctccagggcaacctgggcaaccaggagac
aatggcttccctgggcagagtggagcaagaggccttccgggactcaaagggccaccagga
atccttggagtgaaaggacccaaaggcgaaatgggagaccgaggctccagagggcccact
gcgcgtggacctaaaggtcagccaggacctcctggacttcctggtgagccaggcaaaccc
ggctacggtcaggatggtcgggatgggcagaggggacctcctggtgttcctggacagccc
ggtgtacctgggcctcctggttcagctggtcccaatggttactgcgacccgtcagcctgc
aacctccaggccggagccgcccaccagtctctggatgtgaagggacctgcagggaactaa
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