Etheostoma cragini (Arkansas darter): 117960548
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Entry
117960548 CDS
T07493
Symbol
kcnma1a
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1a isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
117960548 (kcnma1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117960548 (kcnma1a)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
117960548 (kcnma1a)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
117960548
NCBI-ProteinID:
XP_034754389
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All DBs
Position
17:complement(10200147..10341026)
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AA seq
1296 aa
AA seq
DB search
MLAEADGTVPHGSDSSMRTSNIINIINPDSSILISKMEDVVIPFSSEVPCDNNGQRMWWA
FLASSMVTFFGGLFIILLWRTLKYMWTVCCHCNVKHKEAQKVINPAADKPKDEKEEVPIS
EVGWMTSVKDWAGVMISAQTITGRVLVVLVFALSIGALGIYFIDSSDPIESCQHFYEDFT
LQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFL
RALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNY
QSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR
KKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEA
LFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKN
YHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLSTMLAN
LFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLTFPTICELCYVKLKLLLIAIE
YKSEQRESSILINPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCA
CKRLIYSKMSVYKRMKLACCFDCGCSEQDCSCMSGSVHSNMDTLQRAYPLSSVSVHDCAT
TLRASKYKYNGYVRSPADGATTPGNSGSQKEAGVRFKADCNLVEDEHPSTLSPKKKQRNG
GMRNSPNCSPKMMSRHDPLQIPGNEQIESMDMNVKRYDSTGMFHWCPSKEIEKVILTRSE
ASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIVFVGSLDYLRREWET
LHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIEDTSLQDKECILASLNIKS
MQFDDSIGVLQANSQGFTPPGMDRSSPDSSPVHGFVRQASVTTGSNIPIITELVNDSNVQ
FLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPEL
EGLLAEENALQGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNM
LCFGIYRLRDAHLNCPSPCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRTNLSHS
SHSSHSSSKKSSSVHSIPPSNRQNRNSKTREARDKQNATRMNRMGQEKKWFTDEPDNSYP
RNIQIKPMSTHMANQVNQYKSTSSLIPPIREVEDEC
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgaggcagatggcaccgttccccatggaagcgatagctctatgaggacaagc
aatatcattaatattataaatccggactcttcaatcttaatatccaagatggaagacgtt
gtcatcccgttctcgtctgaggtgccctgcgacaataatggacagcgcatgtggtgggca
ttcctcgcctcctccatggtgacgttttttgggggtctcttcatcatcctgctgtggaga
accctcaaatatatgtggactgtttgctgccactgcaacgtcaaacacaaggaggctcaa
aaggtgatcaatccggcagcagacaaaccaaaggatgagaaggaggaggtcccaatcagt
gaggtgggatggatgacttcagtcaaagactgggctggtgtcatgatctccgctcagaca
atcactggcagagttctggtggtgttggtctttgcgctcagcattggggcccttggaata
tacttcatagactcctcagatcctatagaatcctgccagcatttctacgaagatttcacg
ttacagatcgatatggccttcaatgtcttcttcctcctttattttggtctgcgatttatt
gcggccaatgataaactgtggttctggctggaggtcaactcagtggtcgacttctttacc
gttcctcccgtgtttgtttctgtctacttgaacagaagctggctcggtttaagatttctc
agagcactaagattgatacagttttcagaaatcctccagtttttgaatatcttaaaaaca
agcaactccattaagctggtgaacctgtgttccatctttataagcacatggctcacagcg
gcaggattcatacatttggtggaaaactcaggagatccttgggaaaacttccagaattac
cagtcactttcctattgggaatgtgtctacttgctgatggtgacaatgtctacagtgggt
tacggggatgtctatgcaaaaaccacgttggggcgcctgtttatggtcttcttcatcctc
ggtggtttggccatgtttgccagctacgtccctgaaatcatagagttaataggaaaccga
aagaaatatggtggttcctatagtgcggttaatgggagaaagcatattgtggtctgtggt
catattaccctcgaaagtgtctccaacttccttaaagacttcctacacaaggacagggat
gatgtcaatgttgaaatagtttttctccataatatttcccctaatcttgagctggaagcc
ttgttcaaacgccattttacccaagtagagttctaccagggatctgttctcaaccctcac
gatctcgccagagtgaagatcgagtcagcagatgcctgcctaatccttgccaacaaatac
tgtgcggatcctgatgctgaagacgcctcgaacatcatgagggttatttcgatcaagaac
taccatcccaagatcagaataatcacacagatgttacagtaccacaataaggcccatctg
ctgaacattccaagctggaactggaaggagggtgacgatgctatctgcctggcggagctg
aaggcaggcttcatagcccagagctgtctggcccagggcctgtccactatgctagccaac
ctcttctccatgaggtccttcattgagattgaggaggacacatggcagaagtattacctt
gaaggggtggctaatgaaatgtacacagaatatttgtccagtgcctttgttggcctcacc
ttccctactatctgtgagctgtgttacgtgaagctgaagctgttgcttattgccattgaa
tacaagtctgagcagagagagagcagcatcctcatcaacccgggcaaccatgtcaagatg
caggagggaacactgggattttttatcgccagtgatgccaaagaagtaaagagggcattt
ttctactgcaaagcttgtcatgacgacatcacagaccctaagcggatcaagaagtgtgcc
tgcaaacgactgatttattccaagatgtccgtctacaaacgaatgaaactggcatgttgt
tttgattgcggctgttcagagcaagactgctcttgcatgtcaggcagtgtacatagtaac
atggacacccttcagagggcctacccactttcctctgtctctgttcatgattgcgcaacc
actttacgtgcctccaaatataagtataatggatatgtcagatcaccagcagatggcgct
acaacaccagggaacagtggaagtcagaaagaggctggcgttcgattcaaagctgattgc
aatttagtcgaagacgagcatccatcaactctctcgcccaaaaaaaagcagcgcaacgga
gggatgcgaaactcacccaactgctcgcccaaaatgatgagtcgacacgacccccttcaa
attcctggaaatgaacaaattgagagcatggacatgaacgtgaagaggtatgactcgacg
gggatgtttcactggtgcccgtcaaaggaaatcgaaaaagtaatcctgacccggagtgaa
gcctccatgacagtgctgagcggccatgtggtggtctgtatatttggggatgtcacgtcc
gctttagtggggctgcgaaacttggtgatgcctttaagagccagtaattttcattaccat
gagctaaagcctatcgtttttgtgggctcgctggattacctgcggagagagtgggagact
ttacacaacttccccaaggtctccatcttacctggtacgccattaagtcgggcagattta
agggctgtcaacatcaacctctgcgacatgtgcgttatactgtcagccaatcagaacaat
atcgaagatacctcactgcaggataaggaatgcatcttggcatcactcaacatcaaatct
atgcagtttgatgacagcattggggtcttacaggctaattcccaaggtttcacgcctcct
ggaatggacaggtcatctccagacagcagtccagtacatggctttgtgcgtcaggcttct
gtcaccaccggatccaacatccccatcataacagagctagtgaacgactcaaacgttcag
ttcctggaccaagatgatgatgacgacccagacacagagctgtacctcactcagcccttc
gcctgcggcaccgccttcgctgtcagtgtactcgactccctgatgagcgcgacatacttt
aacgataacatcctcacgctgattcggacactggtcacagggggagccacgccagagctg
gagggcctgttggccgaagagaacgccctccaaggtggttacagcacaccgcaaacactg
gccaacagagacaggtgtcgcgtcgcccagctagccctctacgacgggccatttgccgac
ttaggggatggcggctgctacggggatttattctgtaaagcactgaagacgtacaacatg
ctgtgttttggaatctacagattaagagacgctcacctcaattgccccagcccgtgtaca
aaacggtatgtgatcacgaacccaccatatgagtttgagctcgtgcccacagacctgatt
ttctgcctcatgcagttcgaccacaatgcaggccagtcccggacaaacttgtcccactct
tcccactcctcccattcctccagcaaaaagagctcctctgtccactccatcccgccctcc
aaccggcagaaccgtaacagtaagacccgggaggcccgcgacaaacagaatgcaacaagg
atgaatagaatgggccaagaaaagaaatggtttacagatgaaccagacaattcctaccca
cggaatatccagatcaagcccatgagcactcacatggccaaccaagtcaaccaatacaaa
tccactagtagtctgattccaccaatcagagaagttgaagatgaatgctga
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