Etheostoma cragini (Arkansas darter): 117960563
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Entry
117960563 CDS
T07493
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117960563 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117960563 (vps8)
Membrane trafficking [BR:
ecra04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117960563 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_UBOX
zf-RING_Vps41
zf-RING_5
zf-RING_2
ANAPC4_WD40
zf_RING_Vps8_fungal
zf-RING_11
PHD_4
Beta-prop_HPS5
zf-rbx1
Beta-prop_EML_2
zf-C3HC4
WDR55
PHD_NSD
EIF3I
PHD
TPR_GEMI5
Clathrin
Motif
Other DBs
NCBI-GeneID:
117960563
NCBI-ProteinID:
XP_034754427
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All DBs
Position
17:20996323..21070094
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AA seq
1340 aa
AA seq
DB search
QILLHTTRKHKETNNAFLSFISLYYFCSQIDDKEFDIPQVDTPPTLESILNELEDEEEPF
VLEDTCVLNTDNMDAHSCDTSSLASSDSGDPAHLKRDFLICGSSAASLRCEASRKRRTMD
LNATVHGSVLRHSLLKGISAQIVSAADKVDAGLPTAITVAGVIAVGTSHGLALVFGKDTN
QALRLCLGTKATGAEFGAVSALSINHDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPP
GTAILHVKFTDDPTLAVCNDSGGSVFELAFRRVMGMRSCDSRCLFSGSKGEVCCVEPLRA
PPDFRDHPITHYSLLAMASLTKILVIGLKPSLKVWMTFPYSKSDPSSVPQLAWQFVPVQK
TVNPILAFCKGDTVHFLLVRKEETGTIHVIKQKQLHLSCDIISLSWINSRTLVLVDSHEK
LQVVDRPSQEVLETLDLEQVQLVYNSRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQ
LVYLGTKSAHIMALRNWRERIDCLLKQEHFVEALSLAWSFHEGTAKAVVGLFGEPAKRKG
VVSDKMVEILFQFAEHALKKCPEQGKIQVMEQHFHDVVPVLVDYCLLLKKTRSIGGNSGF
NVGLQGQGLNQQSSDWTVVQVCWENQLYDAMIYVFNSSMNDYITPMEKLFAVIGPPLRAG
RGLTDEEVVMGNKLLVYISCCLAGRAYPLGNIPEDLVVQVKNQVFEFLIRLHSADSLEEE
DVFPYIRTLLHFDTREFLNVLAMTFEDFKNDKQALEYQQRIVDILLQVMVDNPDFTPSQV
GGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDDDSRHTERQQVLLELLQVGGVVQF
NEERLLALAEKAKFYQICEFLYEKKHLYDRIIDCYLRDPLRKGEIFSYIHNLMSMPGYSP
EEKKVVKDKGLQHIQELVMLDPSKSADLVVFHYAKEVQQIISELQDDQLLFKFLNCLLEP
RYGVRLALITQKYHHNEATAYLLEKKGDVHGAFAVLLETLKEKLNLLTAEGDRGVEGDGR
PDKEESNSESTLTRVTDSLNNIIALCHRSSDNLYQQQREVLWFPLLETMMASQKLVKGLN
AEHTFEVLKELTMKVLNCMSSFISLPAIIQRILQDPVYGKGKLAEIQGLILGMLDTFNYE
QTLLETTTSLLNHDLHWSLAHLRAAVSRGLHPRQDHCNICLQLYKRRQDSAEKIIVFSCG
HLYHLHCLQQKDSGWGFSSEVQQRWRCYKCSSSQGGRGGLSTETKRGRSTSLAQTRVTSV
YHDARAEAHRKKVVVDATLDLQQEQSWDQLRCLYRGPSRLSILSELAHCHSNDKSGLLIP
GQPGTEIFQLKLSPPPLLEE
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
caaatcctgttgcacacaacaagaaagcacaaagaaacaaataatgctttcttatccttc
atttctttgtactacttctgttctcagattgatgataaggaatttgacattccccaagtt
gacacacctcccacactggagagcatccttaatgagctggaggatgaggaggaaccattt
gtattagaggatacctgcgtgctaaacacagataacatggatgctcactcctgtgacacc
tcctctctggccagctcagacagtggagacccagcacatcttaaacgtgatttcctcatc
tgtggttcctccgctgcctcacttaggtgtgaagctagcagaaagaggaggacaatggat
ctgaatgcgacggttcatgggtctgttcttcgacacagcctgctgaagggcatttctgca
cagattgtctctgctgctgacaaagtggatgctggactgccaaccgctataaccgtggca
ggtgtgattgctgtaggaacgtctcatggtctggctctggtctttggaaaagataccaat
caggctctgcggctctgtctgggtaccaaggcaactggggcagagtttggagcggtctct
gctctcagcatcaaccacgattgctcaagacttctctgcgggtttgccaaaggacagatt
acaatgtgggatctagccaacgggaagctcctgagaacaatcactgatgcccaccctcca
gggacagctatactgcatgtgaagttcacagatgacccaactcttgccgtgtgcaatgac
agtggaggatcagtttttgagctggctttcaggagggtgatggggatgcggtcatgtgac
tctcgatgtctcttcagtggttctaaaggtgaggtctgctgtgttgaaccattgcgtgct
cctccagacttcagagaccatcccatcacacactactctctgctggctatggcctcgctc
actaagattctggtcattggactaaagccctcgctgaaagtctggatgactttcccctac
agcaagtccgatccgtccagtgttccccagctggcttggcagtttgttcctgttcagaag
acggtcaaccctatcctggctttttgtaaaggagatacagtccacttcctcttggtaagg
aaggaggagacggggaccatccatgtcatcaaacaaaaacaactccacctcagttgtgac
atcattagcctgagttggattaacagccgtacgctggtcctggtagacagccatgaaaag
ctgcaggttgtggaccggcccagtcaggaagtattggagactctggatttggagcaggtg
caactggtctataacagccgacatttcaaatcgctggcaactggagggaatgtctcacag
gctctggctttagttggagaaaaggcctgctatcaatcagtctcaagctacgcaggacaa
cttgtctacttgggtaccaagtctgctcacattatggctctaaggaattggagagaacgt
atagactgcctgctgaagcaggaacattttgttgaggctctctctctggcctggtccttc
cacgagggaactgctaaggctgtggttggcttgtttggggagccagcgaaaagaaaggga
gtggttagtgacaagatggtagagatcctgttccagtttgcagagcatgctttgaagaag
tgtccagaacaaggcaagatccaagtgatggagcaacatttccacgatgtggttccagtc
ctggtggactactgcctgctgctaaagaagacgcgcagcatcgggggtaactctgggttt
aacgtgggactgcagggccagggattgaaccagcaatcttccgattggacggtggttcaa
gtgtgttgggagaaccaactctacgatgcaatgatctatgttttcaacagcagtatgaat
gactacattacaccgatggagaaactctttgcagtgattggcccaccacttagagctggg
aggggtctgacagatgaggaagtggtgatgggaaacaaacttctggtgtacataagctgc
tgtcttgcaggaagggcatatccactaggaaacatccctgaagaccttgtggttcaagtc
aagaaccaggtgtttgagttccttatccgtcttcattcagccgattcgttagaggaggag
gatgttttcccatatattcgtacactcctccactttgatacccgggagttccttaatgtc
cttgccatgacatttgaagactttaagaatgataagcaggctcttgagtaccagcagagg
atagtggacatcctacttcaggtgatggtggacaacccagactttactccatcccaggtg
ggcgggctcttcacctttttggcccgccagttggcaaagccagacaacacactttttgtg
aacaggaagctctttgatcaggttttggagttcctttgttgcccagacgatgactcccga
catactgagaggcagcaggttctgctggagctgctgcaggttggcggtgtggtccagttt
aatgaagaaaggctgttggctttggcagaaaaagctaaattctaccaaatctgtgaattt
ctttatgagaagaaacatctgtatgacaggatcattgactgctacctgagggaccccctc
agaaagggggaaatcttcagctacatccacaatctgatgtccatgcctggctacagcccg
gaggaaaaaaaggtagtcaaggacaaaggactgcaacacatacaggagcttgtgatgctt
gatcccagcaagtcagctgacctagtcgtgtttcactatgctaaagaggtgcagcaaatc
atctctgagcttcaggatgaccagctacttttcaagttcctcaactgcctcctggagcca
cggtatggtgtgcgtcttgctctaataacacagaagtaccaccacaatgaggctacagcc
tatctgctggagaagaagggagatgttcatggagcttttgctgtcttgttagagacattg
aaggaaaaactaaatctccttactgctgagggtgacagaggagttgaaggagatggaaga
ccagataaagaggagagcaacagtgaatcaacattgacgagagtaacggattcactgaat
aacatcattgccttgtgtcatcgaagctctgacaacctataccagcaacaaagagaggtt
ctgtggtttccattgctggagaccatgatggcttctcaaaaactagtaaaggggctcaat
gccgaacacacatttgaagtgctaaaggagctgacaatgaaggttctcaattgcatgagc
agctttatttctctgcctgccatcatccaacgaatactgcaggacccagtctatgggaaa
ggaaagctggcagagatccaaggtcttattctgggtatgctggacacttttaactatgag
cagactttacttgaaacaaccaccagtctgttgaaccatgacctccactggtccctggct
cacctacgtgctgctgtctcaaggggacttcacccacgacaagaccactgtaacatctgc
ctccagctgtacaagaggaggcaggactcagctgagaagatcattgttttcagctgtggc
cacctgtaccacttacactgcctgcagcagaaggactctgggtggggctttagttcagag
gtgcaacagcggtggcgctgctacaagtgttcctccagccaaggaggaaggggcgggctt
tccactgagacaaaaagaggccgtagcacgtccctggcacagactcgtgtaacatcagtg
tatcatgacgcaagagcagaggctcacaggaagaaggtggttgttgacgcaacattggac
cttcagcaggaacagtcctgggatcagctacgctgtttataccgaggaccatccaggttg
tccatcctttcagaacttgcccactgccatagcaatgacaagtcagggcttctaattcca
ggtcaaccaggaacagagattttccaactgaaactctctcctccacccttattggaagag
tag
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integrated database retrieval system
