Etheostoma cragini (Arkansas darter): 117960979
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Entry
117960979 CDS
T07493
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117960979 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117960979 (smarca5)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117960979 (smarca5)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
117960979 (smarca5)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
117960979 (smarca5)
RSF complex
117960979 (smarca5)
WICH complex
117960979 (smarca5)
B-WICH complex
117960979 (smarca5)
NORC complex
117960979 (smarca5)
BRF complex
117960979 (smarca5)
NuRF complex (fruit fly)
117960979 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
117960979
NCBI-ProteinID:
XP_034755191
LinkDB
All DBs
Position
2:complement(11717491..11726220)
Genome browser
AA seq
1033 aa
AA seq
DB search
MSELLSCVEQREEQTELEEAGGAEEKSDSSDAGKESSSDAGPDGQDAASSSSKKVPAPGY
EEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKNDEKQNLLSAGD
NRHRRTEQEEDEELLSESTKTTNVCTRFDDSPSYVKSGKMRDYQVRGLNWLISLYENGIN
GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVCL
IGDREERNALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSKL
SEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNCLGDTKL
VERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAGK
MDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKMKDQGS
RVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQVSINAYNEPNSSKFIFMLSTR
AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVER
AEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAILER
GERKTMEMKEKLSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERKA
NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKV
PRNPEMPNSAQLQKEEQGKIDEAEALAEEELEEKENLLQQGFTIWNKRDFNQFIKANEKW
GRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKA
LDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNS
PQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKSGSAQKRKSEA
TPDGRGRRKKLKL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaactcctgagctgcgtggaacagcgggaagagcagactgaacttgaagaagcc
ggaggagcagaggagaagtcagattcttcagatgctggaaaagagtcatcttcagatgcc
gggcccgatggacaagatgccgcctcctcgtcatccaagaaagtacctgctccgggctat
gaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaacagag
ttgtttgcccatttcatccaaccagctgcacagaagacccccacctccccgctgaagatg
aagccggggcgtcctcgcatcaagaatgatgagaaacagaacctgctgtctgcaggagac
aaccgacatcgccgcacagagcaagaggaggatgaagagcttctaagcgagagcaccaag
acaactaatgtctgcacacgctttgatgactctccctcctatgtcaagtcaggaaaaatg
agagactatcaggtccgtggtctgaactggctcatctctttgtacgagaatggcatcaac
ggcatcctagctgatgaaatgggtttggggaagactctgcagactatttccctgctgggt
tatatgaagcactacagaaacatccctggtccccacatggtgctggtgcccaagtccacc
ctctacaactggatgaatgagttcaagagatgggtgccttcgctccgtgcagtctgcctg
atcggagacagagaggagagaaatgccctgatcagagatgtgctgctgcctggagaatgg
gatgtgtgtgtcacctcctatgagatgctcatcattgaaaaggcagtgttcaagaagttc
aactggagatacctggttattgatgaagcccacagaatcaagaatgagaaatcaaagcta
tcagagatcgtacgagaatttaagaccaccaatcgtttgttgctgaccggaacacccctg
caaaacaacctccacgagctgtgggctctgctgaacttcctgctacctgacgtcttcaac
tcagcagacgactttgattcctggtttgacacaaacaactgcttgggtgatacaaagttg
gttgaacgtcttcacactgttctgcggcccttcttgcttcgtcgtataaaagctgacgta
gagaagactctgcttccgaagaaagagatcaagatgtatgtgggtctgagtaagatgcag
cgagagtggtacacaaagattctgatgaaggacattgatatactgaactcagcgggcaag
atggacaagatgcggctgctgaacgttctcatgcagctgaggaaatgctgcaaccatccg
tacctcttcgacggggccgagccgggtcctccatacacgactgacctccacctggtggtg
aacagtggcaagatggtggtgctggacaagctgctacccaaaatgaaggatcagggttct
cgtgtgctcatcttcagtcagatgaccagggtgctggacatcttggaggactactgcatg
tggaggaactatggctactgccgcctggacggccagacgccgcacgaggagagacaggtc
tctatcaacgcatacaatgagcccaacagctctaagttcattttcatgttgagcaccaga
gctggaggactgggtatcaacctggctacggcggatgtggtcatcctgtacgactcggac
tggaacccccaagtcgatcttcaggccatggaccgagctcacaggattggtcaacagaag
caggtacgcgtctttcgtttcatcactgaaaacacagtggaggagaggattgtggagagg
gccgagatgaaactgcgcctggactccattgtgatccagcaaggaagacttgtggatccg
agcgcaaacaagctgggaaaggacgagatgctgtccatcatccgccacggtgccacacat
gtgtttgcctccaaagagagtgagatcacagacgatgacattgatgccatcctggagaga
ggtgaaaggaagaccatggagatgaaggagaagctgtcttcactgggtgagagcactctg
agaaacttcaccatggacacagagaacagcagtgtgtacacattcgaaggagaagattat
agagagaagaaaaaggtcattaccaactggatcgagccacccaagagagaaaggaaagcc
aattacgctgtggatgcttacttcagagaggctctgcgagtcagtgagcccaaagcaccc
aaggctcctcgtcctcccaagcagccaaatgtccaggactttcagttcttccccccgcgt
ctgtttgagcttctggaaaaggaaattctgttctacagaaagaccataggctacaaggtt
ccccgtaatccagaaatgccaaattcagcccagctccagaaagaagagcagggtaaaatc
gacgaggctgaggctcttgcagaggaggaactggaggagaaggagaacctgctgcaacag
ggatttactatttggaacaaacgtgacttcaaccagttcatcaaagccaacgagaagtgg
ggaagagatgatattgagaatattgccagggaagttgaggggaaaacgccagaggaggtc
atggaatattctgctgtattctgggagcgctgtaatgagctgcaggacattgagaagatt
atggcccagatagagagaggagaggccaggatccagagaaggattagtatcaagaaagcc
ctggactcaaagatcggtcgctacaaggctcccttccatcagctccgtatctcctacggc
accaacaaaggcaagaactacacagaggaggaggaccgcttccttatctgtatgctccac
aagctgggcttcgacaaggagagcgtgtatgacgagctgcgtcagtgcatacgcaactcg
cctcagttccgctttgactggttcctcaaatccaggactgccatggagcttcagaggcga
tgcaacaccctgattacactgatagagagagagaacatggagctggaggagagggagaag
gctgagaagaagaaacgtggcccgaagagtggctcagcccagaaacggaagtcagaggca
accccagatggtcgtggacgcaggaaaaagcttaagttgtga
DBGET
integrated database retrieval system
