Etheostoma cragini (Arkansas darter): 117961141
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Entry
117961141 CDS
T07493
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117961141 (ddx1)
03016 Transfer RNA biogenesis [BR:
ecra03016
]
117961141 (ddx1)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117961141 (ddx1)
Spliceosome [BR:
ecra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117961141 (ddx1)
Transfer RNA biogenesis [BR:
ecra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117961141 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
117961141
NCBI-ProteinID:
XP_034755466
LinkDB
All DBs
Position
18:12726741..12735348
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKRGRASIKTGGAIFNNWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTVGCYLDLDKGQISFSKNGNDLGVAFEIAQHVKSQPFFASCVLKNAELKF
NFGGEDFKNAPKSGFVALNQAPEGHTVKSSQSGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNVKQCAKYVDNPKLRELLVIGGVAAKDQLAALEQGIDIVVGTPGRLDDLISTGKLS
LAQVRFLVLDECDGLLSAGYTDFINRVHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIQTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIVFCRTKIDCDNLEQYFIQQGGGPDSKGHQL
SCVCLHGDRKPNERKTNLERFKRKEVKLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDDFDGKVSYGQRRGLGGGNYKGHVDILAPTVQELANLER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggcgttatgcccgaaatcgcgcaggctgtggaagagctg
gaatggctgctccctactgacatccaggcagagtctattcccctcattcttggtggagga
gatgtacttatggcagcagaaactggtagtggcaaaaccggagccttcagtatcccagtg
atccagatcgtgtatgagaccctgaaggatcagcaggagggaaagaggggcagagcttcc
atcaagaccggaggagctattttcaacaattggcagatgaatccttatgatcgcagcaca
gcctttgcaattggtccagatggactgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctccaccaaaggggttaccaaagggaagtactactatgaagtgacctgccat
gaccagggtctgtgtcgcgttggctggtccaccagtcaggcagccctggacttgggaact
gataagtatggttttggttttggtgggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcacgacactgtcggatgctacttggatctggacaag
ggccaaatatccttctctaaaaatggtaatgacctgggtgtggcttttgagatcgctcaa
catgtgaagagtcagcccttctttgcctcctgtgtgctcaagaatgcagagttgaagttc
aactttggaggagaagactttaaaaatgcccctaagagtgggtttgttgccctgaaccag
gcgccagagggccacaccgtcaaatcttctcagtcaggcagtgccaaagtgagtcaagtg
aaagcatcatccaacgcacccaaagccctgatcatcgagccttcgaaggaattggccgaa
caaactctcaacaatgtcaagcagtgtgcaaaatatgttgataaccccaaactcagggag
ctgttggtgattggtggtgtggctgccaaagaccagctggctgctctggaacaggggatc
gacattgtggtggggacacccggcagactagacgacctcatatccactgggaagctcagt
ctggcccaagtccgctttctcgtcctggatgagtgtgacggcctactgtccgcaggctat
acggactttatcaacagggtacacaaccaaatccctcaggtcacttctgacggcaagaga
ctgcaggtgattgtttgttctgccactctgcattcgtttgacgtgaagaagctgtctgag
cgtattatgcactttcccacttgggtggacctgaagggggaggactctgtccctgagact
gtccaccacgtggtagttcctgtcaatcctaaaaccgatcgtctctgggagcgccttggc
aagaaccacatccagactgatgaggtccatgccaaagataacaccagaccaggagcaaac
tctgcagaaatgtggtcagaggccatcaaggtgctgaaaggcgagtacacagtgagggcc
atcaaagagcacaagatggaccaggccatagtcttctgtcgcaccaagatcgactgtgac
aacttggaacagtacttcattcagcaaggaggaggtccagacagtaaaggccaccagctt
tcctgcgtctgtctccatggtgatcgtaagcccaacgagagaaaaacaaacttggagcga
tttaagagaaaagaagtaaagctcctggtctgcaccgacgtggctgccagaggaatcgac
gtccacggagttccttatgtgattaacgtcaccctgccagatgagaagcagaactacgtc
catcgcatcggcagagttggcagagccgagagaatgggactggccatctctctggttgcc
atggagaaggaaaaggtgtggtaccatgtttgcccgaaccgaggcagaggctgctacaat
acccggctgaaggaggatggaggttgcaccatctggtataacgagaaagagctcctgtca
gatattgaggagcatctgaagtgcaccatcacccagtgtgagccagatatcaaagtacct
gtggatgattttgatggcaaggtcagctatggtcagcgcagaggattgggaggtggtaac
tacaagggtcacgtggatattctggccccgacagtccaggagctggctaacctcgagaga
gaagcccaatcttccttccttcacctgggatacatgccaaaccagcttttcagagccttc
taa
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