Etheostoma cragini (Arkansas darter): 117961241
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Entry
117961241 CDS
T07493
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra00100
Steroid biosynthesis
ecra01100
Metabolic pathways
Module
ecra_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
117961241 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ecra01006
]
117961241 (fdft1)
Enzymes [BR:
ecra01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
117961241 (fdft1)
Prenyltransferases [BR:
ecra01006
]
Terpene biosynthesis
Squalene/phytoene synthase
117961241 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
117961241
NCBI-ProteinID:
XP_034755650
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All DBs
Position
18:complement(10934822..10943500)
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AA seq
456 aa
AA seq
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MAGVCCKCPVSLSVFKRSLSVTPRGCGTPRCLLPSWRLGERGLQEAARPCSALRPAGFYR
QTTFFCLFCQESMSLSLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVE
DDMTIPLDKKVPMLNDFHTYLYQDGWCFTESQEKDRQVLSDFPTISLEFRNLAQQYRDVI
SDICHRMGAGMADFLEKKVGSMKEWDLYCHYVAGLVGIGLSQLFSASQLEDPEVGRDTEL
ANSMGLFLQKTNIIRDYLEDMQEGRAFWPQEAWSQFAGRLEDLAQPEKLESALSCLNLLV
TDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQRVVKIRKGQAVT
LMMEATNMNAVQTIIAQYSQEILQKVSHTDPSRDKTLHVLALIREKSALSQSSLASRTHH
LSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMQGQ
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggctggagtatgctgcaagtgtccagtctctctgtccgtgttcaagcgctctctctcg
gtaacgccgcgcggctgcgggacgcctcggtgccttctaccgagctggaggctgggggag
cggggcctgcaggaggctgcccgtccatgcagtgccctcagacccgcaggcttttaccga
caaacgacgttcttttgtctcttttgccaggagtccatgagtttgagtctgcggacctgc
tatctgtacctgaaccaaaccagccggagttttgcagctgtgatacaagcgttggacggg
gagttaaggcatgcagtttgtattttctacctggtgctgcgagcgctggacacagtcgag
gacgacatgactatccctctggacaagaaggtccccatgctgaatgatttccacacctac
ctgtaccaggatgggtggtgcttcacagagagccaggagaaagaccgacaggttctgtcg
gatttccccacgatatcactggaattcagaaaccttgctcagcagtacagagatgtcatc
tcagacatctgccaccggatgggagcaggaatggctgacttcttggaaaagaaagtggga
tccatgaaggagtgggacctgtattgtcactacgtggcgggtctggtgggtatcggtctg
tctcagctgttctctgcgtcccagctggaggaccccgaggtggggcgggacactgagctg
gccaactccatgggcctgttcctccagaagactaacatcatccgagactatctagaggac
atgcaagagggacgtgccttctggccacaagaggcttggagtcagtttgcaggtcgtctg
gaggacttggcccagccggagaagctggagtcggctctctcttgtctcaacctgctggtc
accgatgctctgcgacacgtcccggatgttattgcctacctgtcccgcctgcgcaaccag
agtgtcttcaatttctgtgccattccacaggtgatggcaatagctacactgtcgacatgc
tacaacaaccccatggtgttccagagagtggtgaagatcagaaagggacaagcagtcaca
ctcatgatggaagccaccaacatgaatgctgtgcagaccatcatcgcccagtacagccag
gagattttacagaaggtctcccacacagacccgtcgcgggacaagaccctgcacgtcttg
gcactaatccgagagaagtccgccctgtcacagtctagcctagcgtccaggacccaccac
ctgtcgcccatgtacctgtctgctgccatgttgcttgccgctctcagctggcagtacctc
agcaccactgcagcacaggcacagggcaccggggacatgcagggacagtga
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