Etheostoma cragini (Arkansas darter): 117961455
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Entry
117961455 CDS
T07493
Symbol
prdm1c
Name
(RefSeq) PR domain zinc finger protein 1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117961455 (prdm1c)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117961455 (prdm1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_6
zf-C2H2_4
zf-C2H2_jaz
zf-met
Zf-C2H2_ZNF451_C
zf-C2HE
Zf-C2H2_ZNF451
C2CH-3rd_BIRD-IDD
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
117961455
NCBI-ProteinID:
XP_034756019
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All DBs
Position
18:8175008..8184252
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AA seq
790 aa
AA seq
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MCGSSQGFTASSSPCTPAMLTPESSPQSTGVIAAAMPETKDEDMTSLSEAHFEEKCTYIV
KDQHLDEESENNSKTRAERSLPRNLALRRCHKSAEVLGVTSKELIPKGTRFGPLVGESYT
NETLLKDANRKYFWRVFSEGHLHHILDGLIEDRSNWMRYVNPACTVEEQNLVACQSGLDI
YFYTIKALQPGQELLVWYCPEFAQRCNYPPLGQLAMDSNDQSRAQKKTTEKRGHSVSEIL
RDKPSKSLTTSPRRVDSPLSHANLPAVFPLCPRVVYPIQPNSESIHGHRHATLPNLPPGS
NPAAKRPALSGPVPSGLHFTFPHSQGPVLAKPYQEPSVPDRLHPALRHSPYLLPHYSLGL
NSILPHSYPLYRDQLKPHLTLSSNLLPFDGYAHFFQPLANGHKDLTLALSDTKQDLILSP
TSEHRDNKDLTYERTNYLRIPSDNLRDFTHSPPSNVQADLPIPTTSSASPMVTSLRRALP
SLAPGGRSPPVGMAAFSDCLPSRPTSATQSNSENAMDLRKITQDGQIIGYKTLPYPLTRQ
NGKIRYECNVCGKVFGQLSNLKVHLRVHSGERPFKCQTCNKNFTQLAHLQKHHLVHTGEK
PHECKVCHKRFSSTSNLKTHQRLHSGERPYQCKLCPARFTQFVHLKLHKRLHTGERPHRC
PCCPCAYLHYCSLQVHLQSFCPLSPAASRRHSPEELHRVNAEIERFDTSEAAEQLEAMAA
EVEMDKGNVIDLIKKMESHSSGPHDDEEGETELNIYTSAKECSAFELHHASPLPLHSTSI
KLESGCISEP
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctcctcccaaggcttcacagcctcctcctctccgtgcaccccagccatgtta
accccagaaagctcaccgcaaagcacaggggtcatcgcagcagcgatgccagagacaaag
gatgaagacatgacatcactgagcgaggcacactttgaggaaaagtgcacttatatcgtc
aaggaccaacatctggatgaagagtccgaaaataacagcaagacacgagctgagagatcc
ttaccgagaaacctggcgctgagacgctgccacaagtcggcagaggtgcttggggtgacc
agtaaggaactgattcctaagggaacacgttttggccctctggtgggggaaagctacacc
aatgaaacactgttgaaagacgctaacagaaaatacttctggagggtcttctcggagggg
cacttacaccacatcctggatggtttgatcgaggaccggagcaactggatgcgttatgtc
aacccggcctgtactgtggaggagcagaacctggttgcctgccaaagtggcttggacatc
tacttctacaccatcaaagcacttcagccgggccaggagctcctggtgtggtactgtcct
gaattcgcccagcgctgtaactaccctccacttggccaactcgctatggacagcaatgat
cagagtcgagctcagaaaaagacaacagaaaaacgaggacacagcgtctctgaaatcctc
agagacaaaccgtccaaatccctgactacttcccccagacgtgtggatagtcccttgtct
catgccaacctcccagcagttttccccctgtgcccccgtgttgtctacccaatccagcct
aactcagaatccatccatggccacagacatgcaactctaccgaatctgccaccaggaagt
aatccagctgccaaaagaccagctctaagtggtcctgtcccttccggcttgcacttcacc
tttccgcacagtcaaggccctgttctagccaaaccttaccaagagccttctgtgcctgat
cgacttcatcctgcactgaggcattctccctatctactgcctcactactcgctcggcctt
aacagcattctacctcattcatacccattgtacagagatcaactgaaacctcacttaaca
ctctcatctaatttactgccttttgacggctatgcacacttcttccaaccactggcaaat
ggacacaaagacttgacacttgcactatccgacaccaaacaagacctcattctttcacca
accagtgagcatagagacaacaaggacctcacatacgaaaggacaaactacctcagaatc
ccctcagataacctcagagatttcacacactctcctcccagcaatgtccaagcagacctc
cctatacccaccacatccagtgcttcacccatggtcacctcactccgcagagcactgccc
tctcttgcgcctgggggacgctcaccaccagtgggcatggccgccttttcagactgcctc
ccttccagacccacgtctgccactcagagcaattctgagaatgcaatggacctcaggaag
ataacacaagatgggcagattattggctacaagaccctgccgtaccccctcaccaggcag
aatggaaagattcgttatgagtgcaatgtctgtggaaaggtctttgggcagctgtccaac
ctcaaggtccatctgcgagtgcacagcggagagcgtcccttcaagtgtcagacctgcaat
aagaacttcactcagctggcccatctgcagaaacaccacctggttcacacaggagagaag
cctcatgaatgcaaggtgtgccataagcgattcagtagcactagtaacttgaagacccac
cagcgtctacactcaggtgagaggccctatcagtgcaagctctgcccagcccgctttact
caatttgtccatctcaagctccacaaacgcctccacactggagaacggcctcacaggtgt
ccttgctgcccctgtgcctatctccactactgcagcctccaggtgcacctccaaagcttc
tgccccctctcccctgcggcatctcgcagacactcaccggaggagctacaccgagtcaat
gcggagattgagaggtttgatacgagcgaggcggcggagcagttagaggccatggctgca
gaggtcgagatggacaaggggaatgttattgatttaataaagaagatggagagtcattcc
tctggtccccacgatgacgaagaaggggagactgagctgaacatctacacatcagcaaag
gagtgttctgcttttgagctgcatcatgccagccctctacctctgcattcaaccagcatt
aagctggagtcaggctgcatatcagaaccctaa
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