Etheostoma cragini (Arkansas darter): 117961492
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Entry
117961492 CDS
T07493
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117961492 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117961492 (cdc40)
Spliceosome [BR:
ecra03041
]
Complex C
Other components
Step II factors
117961492 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
117961492
NCBI-ProteinID:
XP_034756104
LinkDB
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Position
18:complement(10078821..10097395)
Genome browser
AA seq
581 aa
AA seq
DB search
MSATVASLVSYGSDSDSENESNINTDVAKVDLADPDAMAHLKPLKSVPTMSVAVLNSAPE
VAVKEAVETGTHLDPSLKEVTYNPTFETMFAPEFGPTNPFKSQQMAAPRNMLSGYAEPAH
LNDFMFEQQRRTFSTYGYALDPSVDTHQVSCSSYIGAVDEAEKNKGLTVFESGQKKSEKR
KKIKGGEAGEIDNFLGPWAKYIDEKDGAKPSEEEQKELDEIIAKRQKKGKNEEDAPAEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSADAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNTGTQFLSAAYDRYLKL
WDTETGQCISRFTNRKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaccgtggcttccctcgtttcgtacggtagcgattctgattccgaaaatgag
tcaaacattaatacagatgttgcgaaagtggacctagcggacccggacgccatggctcac
cttaaacctctgaagtctgtacccacgatgtccgtggctgttctcaattctgctccagag
gtcgccgttaaagaggcagttgagactggcacacacctggacccttcactgaaagaagtc
acctataacccgacatttgagaccatgtttgcaccagagtttgggccaaccaacccattt
aaaagccagcagatggctgcacccaggaacatgttatctggctatgcagaacctgctcac
ctcaacgacttcatgtttgaacagcaaaggaggaccttctccacatatggttatgcttta
gatccatctgttgacacccaccaggtatcctgtagtagctacattggcgcagtggatgag
gctgagaaaaataaaggactaactgtgtttgagagcggacagaagaagtcagagaaaagg
aaaaagatcaaaggtggagaagcaggagagattgacaacttccttggtccatgggcaaaa
tatatagacgagaaagatggggccaaaccatcagaggaagagcagaaagagctggatgag
atcatagccaagaggcagaagaagggaaagaacgaggaagatgcccctgcagaagagaag
actattctccatgttaaagacatgtacgattaccagggcaggtcctacctccacgtccca
caggatgtgggcatcaacctgcgttctgcagatgctcccgacaagtgttacctgcctaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgctatcagactatttccc
agctctggtcatcttctgctctcttcctccatggactgtaagatcaagctgtgggaagtg
tacggcgagaggaggtgtatacggacatttattggtcacagcaaagcagtgcgagacatt
tgtttcaacaacactgggacccagttcctcagcgctgcctatgaccgctacctcaaactc
tgggacactgagacaggccagtgtatctcccgcttcaccaacaggaaggtaccgtactgc
gtcaagttcaacccagacgaggacaaacagagcctttttgtggccggcatgtcggataag
aagattgttcagtgggacatcaggacaggtgaggtggttcaggagtacgaccgtcacctg
ggagccgtcaacaccatcacctttgtggatgagaaccgtcgttttgtcagcacgtcggac
gacaagagtcttcgagtttgggagtgggacatccctgtggacttcaagtacattgctgag
cctagtatgcactccatgccagctgtgacactctctcccaacggtaaatggctagcgtgc
cagtcaatggacaaccagattctgatctttggggcccaaaaccgcttcagactgaacaag
aagaaagttttcaaaggccacatggtggctggctatgcctgccaagtggacttctcccca
gacatgagctatgtggtgtcaggagatgcggatggaaaactgaacatttgggattggaag
accaccaaactttaccacaggatcaaggctcatgacaaggtgtgcatcagcgcactatgg
catccgcatgaaacctccaaggtcattacctgcggttgggatggacaaatcaaactctgg
gactag
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