KEGG   Etheostoma cragini (Arkansas darter): 117961577
Entry
117961577         CDS       T07493                                 
Name
(RefSeq) syndecan-3-like isoform X1
  KO
K16338  syndecan 4
Organism
ecra  Etheostoma cragini (Arkansas darter)
Pathway
ecra04512  ECM-receptor interaction
ecra04514  Cell adhesion molecule (CAM) interaction
ecra04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117961577
   04514 Cell adhesion molecule (CAM) interaction
    117961577
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117961577
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:ecra00535]
    117961577
Proteoglycans [BR:ecra00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   117961577
SSDB
Motif
Pfam: Syndecan
Other DBs
NCBI-GeneID: 117961577
NCBI-ProteinID: XP_034756261
LinkDB
Position
18:complement(7701324..7704776)
AA seq 167 aa
MGISVSFLFLALGLLHPIHMSFPVLPGDLEGSGYDLDISGSGDWSQQGEMENIEYNPNSE
DVRTFAGNAGGGTKTTLHDSSVLNFDGAHKDSGSGFVFVANSKGFLENKEVFTAVIAGGV
TGVALAAALAALLIYKWQKKDNGGYILGQQRASDEDYHRPDREHVVV
NT seq 504 nt   +upstreamnt  +downstreamnt
atggggatatctgtatcttttttgtttttagctttgggattattacatcctatccatatg
tcgtttcctgtccttcctggagacttggagggatcaggatatgacctggatatttctggc
tctggggattggtcacaacaaggtgaaatggaaaacattgagtacaaccccaacagcgaa
gatgtccgaacgtttgcaggaaacgcaggaggtggaaccaagactacactccatgattct
tcagtcctgaattttgacggtgcacacaaagacagcggatcaggatttgtttttgtggca
aacagcaagggtttcttggagaacaaagaagtttttactgctgttattgcaggaggagta
acaggagtggcacttgcagctgcactggcagcactattaatctacaaatggcagaagaaa
gataatggaggatatattctgggccagcagcgggcttcagacgaagattatcacagacca
gacagggaacacgttgttgtttaa

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