Etheostoma cragini (Arkansas darter): 117961771
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Entry
117961771 CDS
T07493
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecra00535
]
117961771
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117961771
04091 Lectins [BR:
ecra04091
]
117961771
Proteoglycans [BR:
ecra00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
117961771
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
117961771
Lectins [BR:
ecra04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
117961771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
EGF_3
PGDH_inter
I-set
Motif
Other DBs
NCBI-GeneID:
117961771
NCBI-ProteinID:
XP_034756625
LinkDB
All DBs
Position
1:complement(31676601..31698120)
Genome browser
AA seq
1551 aa
AA seq
DB search
MMWWIVLLCACLHVTSASSDYSRIYGDDSFMDPEDVLSVSIPLEEPQRPLLGATLLLPCC
FKDHTVPDPGAPTIAPLAHRIKWSLVTREKVTTILVALEGQVRVSESYLDRVHLVNYPMN
STDASIKISELRSSDTGVYRCEVQLGIEDNHDIVHVQVQGMVFHYRAIMGRYTLTFEKAK
TACSQNSAVMASPEQLQAAYDDGFHQCDAGWLSDQTVRYPIHDPRVNCYGDKEELPGVRT
YGLRDLSETYDVYCFTEKMTGRVFYTAAAEKFTFSEAEVACTNQGAQLATTGQLYLAWQG
GMDVCNAGWLGDRSVRYPINIRRPQCGGGLLGVRTVYLHTNQTGYPLLESRYDAFCYTES
PDEEGSGIIEEGSGRLSVTTVTESPEVLYRRTTTESEVIGVVETQQPTVVDFTFTESPTG
MPLPQPPNVTEFIPDLIEAAIARPDTGREPSKGFVMPPTGVVFHYRSGSSRYAFTFVEAQ
LACQSVGASMATPEQLQAAYEAGYHQCDAGWLLDQTVRYPIVFPRHKCAGDLGAQPGVRS
YGLRPADERYDVYCYTDRLKGEVFHVGSAEGFTYDEAASSCQEHNSILASTGELYTAWKM
GFDKCRAGWLLDRSVRYPINNPRVECGAGISGVHTVYAHANQTSYPEVDARFDAYCFRAD
ILLIANETGLNVTDIQEALLNLTSITDLLRPAVPSIVSPIPVDTLGSGSGSAEFGSGSRV
DGASGGYSGALSGSGDLSGSGDQATSGDLSGSGDLSGSGDQATSGDLSGSGDLSGSGDRA
TSGDLSGSGDLSGSGDRLTSGDLSGSGDHVTSGDLSGSRDLSDSSDLSGSGERVISGDMS
GSGDQFTSGDLSGSGDMAGSARAELPSGVSGFSSADASGSALSGEGSGITVVFLGINSIV
SGEGSVTGGPQEAGEGSTGIFIFPSSESGSGVISGSGDLSEFGSGFSSAESGSSSSASGQ
FSGMSSGFTTDQDFSGFSGFPSVFSSGSASGQSGDLSGSGDTQIILIDTELIDASTSSTN
KEYELSGGLLSFSGSGDISGSGIVSGSASGSGSGFWSGVTFVESGFTDMTVSSSGEQEAS
GVLLHSSGQKSSGHLFSGFGSSGFLSGSESGMSGSRMSESGMSGSESSLSGEEGSVTFFT
RDFWTEVPGNATRSMELGQGSVQYSGEGSSSSSGFHSGSGDSHLSTASGPFSGASSGDLS
QVVVLPSPSSEWGLTESTTGPEEALSGAELSQIPSGIYGTPHPVLAPAGLAAIPTTTTPA
SVQAPGDDKETDSLEGGLNPCEPNPCGAATCTVEDGVAICHEVDVCHPNPCANGATCVES
ADSYKCLCLPSYGGERCEIDEQRCEEGWTKFQGNCYLHFYDREEWLDAEQRCRDLNAHLV
SIITPEEQDFVNSNTQDYQWIGLNDKTIENDFRWTDGTPLQFENWRPNQPDNYFNSGEDC
VVMIWHENGQWNDVPCNYHLPFTCKKGPAFCGSPPEVENAHMFGNRREEYPVNAIIRYQC
NPGFRQRHPPVVRCKADGQWEKPQVECTDVKARKRIQRRSSRSLAASGKLH
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atgatgtggtggattgtgttgctgtgtgcgtgtctacatgtcacctcagcatcatctgat
tactccaggatttatggagatgactcgtttatggacccggaggatgtgctgagtgtgagc
attcctctggaggagccacagcgtcctctactaggggcaacgttgctactaccgtgttgc
ttcaaggaccacactgtcccagaccccggtgctcccaccatcgctccccttgctcatcgc
atcaaatggagcctcgtcaccagagaaaaagtcacgactatcctggtggccttggaagga
caggtgcgtgtcagcgagagctacctggacagagtccatctggtgaactaccctatgaat
tctacggatgctagcatcaagatatcggagttgcggtccagtgacacgggagtctaccgc
tgtgaggtccagctcggcatcgaggacaaccatgacatcgtccatgtgcaggttcaaggt
atggtgtttcactacagggccatcatgggacgctacactttgacttttgaaaaggcaaaa
acagcatgctcccagaacagtgcagtcatggcttcacctgagcagcttcaagcggcctac
gatgacggattccaccagtgtgacgctggctggctctctgaccagactgtcaggtacccg
atccatgatcctcgtgtgaactgctatggtgacaaagaggagctgcctggcgtcaggaca
tatggattgagggatctcagtgagacttatgatgtctactgcttcactgagaaaatgaca
ggcagagttttctacaccgctgctgcagaaaagtttaccttttctgaggctgaggtggca
tgcaccaatcagggagctcagttggccactactggtcagctctacctggcctggcagggt
gggatggatgtctgcaacgccggctggctgggagacaggagcgtccgctaccccatcaac
attcgtcggccgcagtgtggagggggtctgctgggggttcgaactgtttacctccacaca
aaccagacaggatacccactacttgagtcccgttacgacgccttctgctacacagagtcc
cctgatgaggaagggtcaggcatcatagaagagggaagtggcaggctgagtgttaccacg
gtgacggagagcccagaggtgctctacagaaggacgaccacagagagcgaggtgatcgga
gtggtggagactcagcagcctaccgtagtggacttcaccttcacagagagccctaccggg
atgccgctgcctcagccgcccaacgtcactgagttcatcccggacctgatagaggcggcc
atcgcccggcccgacacaggccgggagcccagcaaaggctttgtgatgcctccaacgggt
gtggtcttccattatcgctcaggctccagccgctatgctttcaccttcgttgaggcccag
ctggcctgccagagtgtcggcgcctccatggccacgccagagcagctgcaggcagcgtac
gaggctggatatcaccagtgtgatgcaggatggttactggaccagactgtaaggtatccc
attgttttccctcgacataagtgtgctggagatctgggggctcaacctggagttcggtca
tatggtttgagaccagcagacgagagatatgatgtgtactgctacactgatcggctcaaa
ggtgaggttttccatgtgggctccgctgagggtttcacatatgatgaggctgcttctagc
tgtcaagagcacaactctatactggcctccaccggggagctctacacagcctggaaaatg
ggtttcgacaagtgccgtgctggctggctattggatcgtagcgtccgctatcccatcaac
aacccccgcgttgagtgtggagctgggatctcaggagtacacactgtttacgctcacgcc
aaccagacaagctatcctgaagttgatgcaagatttgatgcatactgtttcagagcggat
attctacttattgcaaatgaaactggactgaatgtcacagatatccaggaggccctgctt
aacctaacatcaattactgatctgctgaggcctgctgttccttccatcgtctctcccatc
cctgtggataccttgggttctggctcaggctcagcagaatttggctcagggtctagggtt
gacggtgcctctggaggttactctggagctttgtctggatctggagacctgtctggttct
ggagaccaggcaaccagtggagatctgtctggatctggagacctgtctggttctggagac
caggcaaccagtggagatctgtctggatctggagacctgtctggttctggagacagggca
accagtggagatctgtctggatctggagatctgtctggatctggagacaggttaaccagt
ggagatctgtctggatctggagaccatgtaaccagtggagatctgtctggatctcgagac
ctttctgactcttcagacttgtctggttctggagaaagggtaatctctggagatatgtct
ggttctggagatcaattcacctctggagacttgtctggttctggagacatggctggtagt
gccagggctgagctacccagtggagtgtcaggcttcagcagtgcagatgcttctggatca
gctctcagtggagaagggtctggcatcactgttgtttttttgggcatcaacagcattgtc
tctggagagggctcagttacaggaggaccccaagaagccggagagggaagcacagggatc
tttatcttcccttcatctgaatcaggctctggagtgatcagtggaagcggggacctctca
gaatttggatctggatttagctctgcagagagtggctcttccagctctgcaagtggacag
ttctctggcatgtcatctggtttcaccaccgaccaggatttttctggattcagtggtttt
ccatcagtattctcttctggaagtgcaagtggccagtcaggagatctttcgggaagtgga
gacactcagattatactaatagatactgaactgattgatgcatccacctccagtaccaac
aaggagtatgagcttagtggaggcctactgtcattcagtggctctggagacatttcagga
tctggtattgtcagtggctcagcctctggaagtggctctgggttctggtcaggtgtgacc
tttgtggaatcagggttcacagacatgacagtgtcatcctctggagagcaggaggcctct
ggggttttactccacagctctggacagaagagtagtggacatttgttttctggatttgga
agctcaggtttcctctctgggtctgaatcgggaatgtcgggttcgagaatgtctgaatca
ggaatgtctggatctgagtcctccctgagtggagaagaaggcagtgttacattttttact
agagatttttggacagaggtacctggaaacgctacgcggtctatggagcttggacagggg
tcggtgcagtacagcggagaaggaagcagtagcagcagtggcttccactctggcagcgga
gacagccacttgtccacagccagtggccctttttcgggggcttcctctggtgatttgtca
caggtggtggtgctgccgtctccatccagtgagtggggactgacagagagcaccacggga
ccagaggaggccctcagtggggctgaactgtcacagatccctagtggcatctatggaact
ccccaccctgtgcttgcccccgcaggactggctgctattcccaccacaaccacaccagca
tctgtgcaggcaccaggcgatgataaagaaacagattcattggagggtggtttgaaccca
tgtgaacccaacccctgtggagctgctacatgcaccgtagaggatggggttgctatctgc
catgaggtagatgtgtgccatcccaacccttgtgccaatggagcaacctgtgtggagagc
gcagactcttacaaatgcttatgcctgcccagctacggaggggaacgctgtgagatcgat
gagcagcggtgtgaagagggttggactaagtttcaggggaactgctacctgcacttctat
gacagagaagagtggctggacgcagagcagcgctgccgggacctcaacgcccacctggtc
agcatcatcaccccagaggagcaggactttgtcaactcaaacacacaggactaccagtgg
atcgggctgaatgacaagacaatcgagaatgacttccgctggacagatggcactccactg
caatttgagaactggaggccgaaccagccagataactacttcaactctggagaagactgt
gtggtgatgatctggcacgagaacggccagtggaacgacgtgccctgcaactaccacctg
ccgtttacctgcaagaaaggcccggcgttctgtggctccccgccagaggttgagaatgcc
cacatgtttggtaacagaagggaggaataccctgttaacgccatcatccgatatcagtgc
aacccaggctttagacagcgccaccctcccgtggttcgctgtaaagcagacggacagtgg
gagaaaccccaagtggaatgtactgacgtgaaagccagaaaaaggatacagcggaggagc
agcaggagtctggcagccagcggcaagcttcactaa
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