Etheostoma cragini (Arkansas darter): 117962232
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Entry
117962232 CDS
T07493
Name
(RefSeq) collagen alpha-1(XXV) chain-like
KO
K24356
collagen type XXV alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117962232
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117962232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117962232
NCBI-ProteinID:
XP_034757290
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All DBs
Position
19:18088635..18216222
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AA seq
488 aa
AA seq
DB search
MEIAEARGASKCVDKMEKEVAHKRQHCGTTVLHIISPLCSVASIAFCVLLSLNTADLKNR
VVDLERGNDETTLIRAPGYSMDHFNSLIEQRVDELLSQRSYEHFVKIRTARQAEPECSCP
PGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGDQGPRGLPGPPTLAALHSNQILTVKGDQ
GQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGLPGLAGDPGQPGEPGIMGPEGPQGHKGSL
GPPGNPGVDGLKGDVGIPGLDGVPGAKGETGERGEKGDMGEDGPKGDIGEKGDAGSTAAG
IKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFFGPQGEPGLPGLPGTKGERGDHGPQG
KGERGELGPIGPKGSQGEAGTPGLKGSKGETGDKGEQGSFGPKGPPGQKGDQGATEIIDY
NGNIQEALQKITTITVTGPPGPMGPMGPEGMKGDRGMPGLPGLDGERGASGLDGKPGIRM
LPSQFRSL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctaagtgcgtggataaaatggagaaagaagtg
gcgcacaagcgacaacattgcggcacaacagtgctgcacattatctcgcctttgtgctca
gtggcgtccatcgccttttgcgtccttctgagccttaacacagctgatttgaagaaccgg
gttgtggatttggagagagggaacgacgagaccaccttgatccgagcccccggctactcc
atggatcattttaattcattgattgaacaaagagtggacgagctcctctcacagcgctcc
tatgaacattttgtcaagattcggactgccagacaagcggaaccagaatgcagctgccct
ccaggacctccaggaaagcgaggaagaagaggccgcaatggagaacctggacctcctggc
cctccaggtcccaagggtgaaaagggggatcaaggcgaccagggaccacggggattgcct
ggtccccctacgctggctgctttgcacagcaatcagatcctgactgtcaagggcgatcaa
gggcaagctggaccacctgggcctccggggccaccgggccctcctgggccaagggggccc
cctggggacacagggaaagacgggcccagaggtttacctggtctagcgggggatccaggg
cagcctggagaaccaggaatcatgggacctgaggggccacaggggcacaagggttcactc
gggcctcctggcaacccaggtgtcgacggactaaagggggatgttggcatcccaggactg
gacggtgtccctggagccaagggggaaacaggagagcgaggtgaaaagggcgatatgggt
gaagacggaccgaaaggcgacataggagaaaagggagatgcaggctccactgcggctggc
atcaagggcgaacctggagagcctggacgaagtggattaaagggagagccaggacttcca
gggctgcctggacttccagggataaagggcgagcctggattcttcggcccccagggagag
cccgggcttccaggactcccaggaaccaagggtgagagaggcgaccacgggccacaagga
aaaggtgaaagaggagaacttggacccattggaccaaagggctcacaaggagaggctggt
acacctggtcttaaaggttcaaagggggagactggagacaaaggggagcagggatctttt
ggccccaagggccccccagggcagaaaggagaccaaggagccactgagatcatcgactac
aatggaaacattcaggaggctttacagaagataaccactattacagtaacgggtcctcct
ggacctatggggccgatgggacccgagggtatgaagggggaccgtggtatgcctggtctc
cctggactcgatggagaaagaggagcctccggcttggacggcaagcccgggattaggatg
ttgccatctcagttcaggtctctgtag
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