Escherichia coli O157 H7 Sakai (EHEC): ECs_0151
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Entry
ECs_0151 CDS
T00048
Symbol
ligT
Name
(RefSeq) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ecs
Escherichia coli O157:H7 Sakai (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecs03016
]
ECs_0151 (ligT)
Enzymes [BR:
ecs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
ECs_0151 (ligT)
Transfer RNA biogenesis [BR:
ecs03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
ECs_0151 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-GeneID:
913775
NCBI-ProteinID:
NP_308178
UniProt:
Q8X906
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All DBs
Position
complement(165824..166354)
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AA seq
176 aa
AA seq
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MSDPQRLFFAIDLPAEIREQIIHWRATHFPLEAGRPVAADNLHLTLAFLGEVSAEKEKAL
SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR
PFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWVLTQ
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccgcaacgtctgttctttgctatcgacttacctgcagaaatccgcgaacag
attatccactggcgcgccacacacttcccacttgaggcgggacgtccggtcgccgccgat
aatttgcatctgactctggcatttttaggcgaagtgagcgcagagaaagagaaggcgctt
tctcttttagccggacggattcgtcaacctggtttcacactcacgcttgatgacgccggc
caatggctgcgttcgcgtgtggtgtggttagggatgcgtcagccgccacgcggcttaatc
cagctggcgaatatgctccgttcacaggctgcccgcagcggttgttttcaaagcaatcgt
ccgtttcatccacatattaccttattgcgcgacgccagcgaggcggtgacaatcccgccg
ccaggttttaactggtcatatgcggtgacggagttcaccctttacgcctcctcgtttgcc
cgtggacgcacacgctacacgccgctaaaacgctgggtgctaacgcaataa
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