Escherichia coli O157 H7 Sakai (EHEC): ECs_1492
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Entry
ECs_1492 CDS
T00048
Symbol
mfd
Name
(RefSeq) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecs
Escherichia coli O157:H7 Sakai (EHEC)
Pathway
ecs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECs_1492 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecs03400
]
ECs_1492 (mfd)
Enzymes [BR:
ecs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECs_1492 (mfd)
DNA repair and recombination proteins [BR:
ecs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECs_1492 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-GeneID:
913354
NCBI-ProteinID:
NP_309519
UniProt:
A0A0H3JFE1
LinkDB
All DBs
Position
complement(1529784..1533278)
Genome browser
AA seq
1164 aa
AA seq
DB search
MPPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG
VLIVPVNTLMQRVCPHSFLHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT
RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI
ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
TGDLENSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL
PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLAR
IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT
INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS
SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK
HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL
AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKI
DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQK
AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV
ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA
RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD
LSERKTRIEWVRQFMRELEENAIA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccccatatgttgaggcatatcctaacgagaatctgacaaccgttatgcctgaacaa
tatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggcgagttaaccggc
gctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgccggaccggtggtgctt
attgcgccagatatgcaaaatgccctgcgtttgcatgatgaaattagccagtttaccgac
cagatggtgatgaatctggcggactgggaaaccctcccttacgacagtttttcgcctcat
caggacattatctcctcgcgcctttccaccctttaccagctaccgacaatgcagcgtggc
gtactgattgttccggtgaatacacttatgcagcgcgtttgcccgcacagttttctccac
ggtcatgcgctggtgatggaaaaaggtcagcgcctgtcacgagatgcattacgaacccaa
ctggatagcgccggttatcgccatgttgaccaggtgatggagcacggcgaatacgccacg
cgcggcgcgttgctggatctcttcccgatggggagtgagttgccttatcgtcttgatttc
tttgatgatgaaatcgacagtctgcgggtgtttgacgtcgacagtcagcgcacgctggag
gaagtagaagcgatcaacctgctgcctgcgcacgaatttccgaccgataaagcggcgatt
gaactgttccgcagccagtggcgcgataccttcgaagtgaagcgcgatccggaacatatt
taccagcaagtgagtaaaggcacattacctgccgggatcgagtactggcagccattgttc
ttcagcgaaccactgccgccgctgttcagttatttccctgccaataccttgctggtgaat
actggcgatctggaaaacagtgccgaacgtttccaggctgacacgctggcgcgttttgag
aatcgcggcgtcgatccgatgcgcccactgttgccaccacaatcgctctggctgcgggtg
gacgagctcttctcagagctgaaaaactggccccgagtgcagctaaaaactgaacattta
ccgacaaaagccgcgaatgccaatttaggtttccagaaactgccagacctggccgttcag
gcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagtctttcgacggtccg
gtggtgttctcggtagaaagtgaaggccgccgtgaagcgctgggtgaactgctcgcgcga
attaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgaccgtgggcgttat
ctgatgattggcgctgcagagcatggttttgtcgatacggtacgtaatctggcgctgatt
tgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggattctcgccgcacc
atcaaccccgatacactgatccgtaacctcgcggaactgcatattggtcagccggtggtc
catctggagcacggcgtcgggcgctatgccggaatgaccacgctggaagcaggcggcatt
accggcgagtatctgatgctcacctatgccaacgacgccaaattgtatgttccggtgtcg
tcgctgcatctgattagccgttacgcgggtggtgcggaagaaaatgccccgctgcataaa
cttggcggcgatgcgtggtcacgcgcgcggcagaaagcggcggaaaaagtgcgtgatgtg
gcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggcttcgcgtttaaa
cacgatcgtgagcagtatcagttgttctgcgacagcttcccgtttgaaaccacgccggat
caggcgcaggccattaatgcggtacttagcgacatgtgtcagccgctggcaatggatcgt
ctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgcgccgctttcctg
gcagtagataaccacaagcaggtggcggtgctggtgcctaccacccttctcgcgcagcag
cattacgacaacttccgcgaccgtttcgccaactggccggtacgtatcgaaatgctctcc
cgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcggaagggaaaatc
gatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagtttaaagatttaggc
ctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagagcgcattaaagcg
atgcgcgcgaacgtggatattctgacgcttactgcaacgccgatcccacgtacgctgaat
atggcaatgagcggaatgcgtgacctatcgattatcgccacgccgcccgcccgtcgtctg
gcagttaaaacctttgtccgtgagtatgacagcctggtggtccgcgaggcgatcctgcgt
gaaattttgcgcggaggacaggtttattatctctacaatgatgtggaaaacattcagaaa
gccgccgaacggctggcagaactggtgccagaagcgcggatcgccatcggtcacgggcag
atgcgcgagcgcgaactggaacgggtgatgaatgatttccatcatcaacgtttcaacgtg
ctggtttgtacaaccattatcgaaaccgggatcgacatcccgacagccaacaccattatc
attgaacgcgcggatcacttcggtctggcgcaactgcaccagttacgcggtcgcgtcgga
cgttcgcatcatcaggcatatgcatggctgctgacgccgcatccaaaagcgatgactacc
gatgcacaaaaacgtcttgaagcgattgcctcgctggaagatctcggggcaggttttgcg
ctggcaacgcacgatctggagattcgcggcgcgggtgaactgcttggcgaagaacaaagc
ggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaaaacgccgtcgat
gcactgaaagccggacgcgagccgtcgctggaagatctcaccagccagcaaacagaagtc
gagctgcggatgccgtcgctattgccagatgatttcattcctgacgtgaatacgcgtctg
tcgttctataaacgtattgccagcgccaaaacggaaaacgaactggaagagatcaaagtc
gagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctgctggatattgcc
cgtctacgccagcaagcgcagaaactggggatcaggaagctggaaggtaatgagaaaggc
ggcgtgatcgaatttgccgagaagaatcacgttaatccggcctggttgattggtttgctg
caaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaaatttattcaggat
ttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgtgaactggaagaa
aacgcgatcgcttaa
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