| Entry |
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| Symbol |
hrpA
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| Name |
(RefSeq) ATP-dependent helicase
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| KO |
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| Organism |
ecs Escherichia coli O157:H7 Sakai (EHEC)
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| Brite |
KEGG Orthology (KO) [BR:ecs00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ecs03019]
ECs_2015 (hrpA)
Enzymes [BR:ecs01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECs_2015 (hrpA)
Messenger RNA biogenesis [BR:ecs03019]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECs_2015 (hrpA)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1999028..2002930
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| AA seq |
1300 aa
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRIGHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWFNKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG |
|---|
| NT seq |
3903 nt +upstreamnt +downstreamnt
atgacagaacaacaaaaattgacttttacggccttgcagcagcggctggattcgctgatg
ctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttgccggttagt
cagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatagtcgccggg
gaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgcggg
attaaagggctgatcggccatacccagccgcgtcgcctggcggcaagaacggtagcgaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctaatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacactatcattattgacgaagcgcac
gaacgtagcctgaatatcgattttctgctcggttatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattattgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgacgacactgagcgcgaccagttgcaggcaattttcgat
gccgtggacgaactaagccaggaaagccccggcgacattctgatctttatgagcggcgag
cgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaatagcgaacagaaccgcgtgttccagtcgcacagc
gggcgacgcattgtgctggcgaccaacgtcgcggaaacctcgctgactgtaccggggatt
aaatacgttatcgaccccggtacggcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagcccatttcgcaggcgtctgccaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcgctggggctaggcgatatcgctgcgttcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtctgcgctctccattcaggatccgcgcgaacgtccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtgaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgtgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtggtgaaagaactcggcattccggtgaacagcgaaccggcggagtatcgt
gaaattcacattgcgttgctgacggggttgctttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttgatt
aaacgtacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagcttgaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgctgtttgagttctacgac
cagcgcatcggccacgatgtaatctccgctcgtcacttcgacagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaagatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccgctg
ccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccctggtctgcgccgc
gaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtacct
gcgccaaactatgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctatctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagttgccggaaagctacgaacagaagcgtggtaactacaaagtgaaggcg
tggccggcgctggtggatgagcgcgacagtgtggcgatcaaactgtttgataacccgctg
gagcaaaaacaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccctca
ccaatcaagtatttacatgagaagttaccaaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcatgcggtgtggatcaactg
atcgacgccaatggaggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtgcgtgccgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctt
acggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggctgggcgacacgctgcgttatttgcaggcgattgaaaaacggctg
gaaaaactggcggttgatccacatcgcgatcgtgcacagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggttcaacaaactcccgcctgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa |
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