Escherichia coli O7 K1 IAI39 (ExPEC): ECIAI39_3005
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Entry
ECIAI39_3005 CDS
T00829
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
ect
Escherichia coli O7:K1 IAI39 (ExPEC)
Pathway
ect03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ect00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECIAI39_3005 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ect03021
]
ECIAI39_3005 (rho)
03019 Messenger RNA biogenesis [BR:
ect03019
]
ECIAI39_3005 (rho)
Transcription machinery [BR:
ect03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ECIAI39_3005 (rho)
Messenger RNA biogenesis [BR:
ect03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ECIAI39_3005 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CAR19124
UniProt:
A0A0H3MTF9
LinkDB
All DBs
Position
complement(3113531..3114790)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKANDDFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaatctggctcgtatgcgtaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggtgatggcgtactggagatattgcaggat
ggatttggtttcctccgttccgcagatagctcctacctcgccggtcctgatgacatctac
gtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaac
ttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgcatggaacgtggtaacggttctactgaagatttaaccgctcgc
gtactggacttggcatcacctatcggtcgtggtcagcgtggtctgattgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacattgcccagagcattgcttacaaccacccg
gattgtgtgctgatggttctgctgattgacgaacgtccggaagaagtaaccgagatgcag
cgactggtaaaaggtgaagttgttgcttccacctttgacgaacccgcatctcgccacgtt
caggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcacaagaaagacgtt
atcattctgctcgactccatcactcgtctggcgcgcgcttacaacaccgttgttccggcg
tcaggtaaagtgctgaccggtggtgtggatgccaacgccctgcatcgtccgaaacgcttc
ttcggtgcggcgcgtaacgtagaagagggcggcagcctgaccatcatcgctaccgcgctt
atcgataccggttccaagatggacgaagttatctacgaagagtttaaaggtacaggcaac
atggaactgcacctctctcgtaagatcgctgaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgctcacgactcaggaagaactgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatggaattcctcatt
aataaactggcaatgaccaaggccaatgacgatttcttcgaaatgatgaaacgttcataa
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