Escherichia coli O7 K1 IAI39 (ExPEC): ECIAI39_3902
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Entry
ECIAI39_3902 CDS
T00829
Symbol
rtcR
Name
(GenBank) sigma 54-dependent transcriptional regulator of rtcBA expression
KO
K14414
transcriptional regulatory protein RtcR
Organism
ect
Escherichia coli O7:K1 IAI39 (ExPEC)
Brite
KEGG Orthology (KO) [BR:
ect00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ect03000
]
ECIAI39_3902 (rtcR)
Transcription factors [BR:
ect03000
]
Prokaryotic type
Other transcription factors
Others
ECIAI39_3902 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
NACHT
AAA_22
AAA_30
AAA_33
AAA_7
AAA_14
AAA_2
AAA_19
T2SSE
ATPase_2
TsaE
ResIII
MCM
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
CAR20014
UniProt:
A0A0H3MQX4
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All DBs
Position
4052933..4054531
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AA seq
532 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWRPSLCLCQQESLVINRLELLHDARSRSLFETLK
RDIANVSPETKVVGVEIELHNPWDFEEVYACLHDFARGYAFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNAHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVVEGKFREDLYARINLWTFALPG
LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSSQAAWRGNFRELSASVT
RMATFATSGRITLEVVEDEINRLRYNWQESRPSVLTQLLGAEAENIDLFDRLQLEHVIAI
CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFNLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggcaccgtactggattatgccgggcgcggc
agtcagcgatggtcgaaatggcgtccgtcactctgtctatgccagcaagaatcgttagtc
atcaatcgactggaattgttgcacgacgcccgctcacgctcgctgtttgaaacgcttaaa
cgcgatatcgccaatgtttcgccagaaacaaaagtggtgggcgttgagatagaactgcat
aacccgtgggatttcgaagaggtttacgcctgcctgcatgatttcgcccgtggttacgcg
ttccagccagaaaaagaagactatttaattcacatcaccaccggtacccacgtcgcgcag
atttgctggtttctgctggcagaagcgcgttatctacccgcccggttgatacaatcttca
ccaccgcgcaaaaaagaacaaccgcgcggcgcaggtgaagtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaaccctcgat
ttcctcaaatccggcattgccacgcgtaacgcccacttcaaccgcatgattgagcagatc
gaaaaagtggcgatcaaatcccgcgcaccgatcctgctcaacggcccaaccggtgcggga
aagtcgtttctggcacgacgcatcttcgagttaaaacaggcgcggcatcagtttagcggc
gcgtttgtggaggtgaactgtgccactctgcgcggcgataccgccatgtcagcgctgttt
ggtcatgtgaaaggcgcgtttaccggggcgcgggagtcgcgggaaggattattacgcagc
gccaacggcgggatgttatttcttgatgagattggcgaactgggcgcagacgaacaggca
atgctgctgaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agtagcgattttcagcttatcgccggaacggtgcgcgatttgcgccaactggttgtcgaa
ggcaaatttcgcgaagacctgtacgcacggattaatctctggactttcgctctgccgggg
ctacgccagcgccaggaagatattgaacctaacctggattatgaagtggagcgccacgcc
tcacttaccggcgacagcgtgcgttttaacaccgaagcgcggcgcgcctggctggccttt
gcaacatcatctcaggcggcatggcgcggtaactttcgcgagctttctgccagcgtcacg
cgaatggcaacctttgccactagcggacgcatcactctggaagtggttgaagatgagata
aaccgtctgcgctataactggcaggagagccgcccttccgtgcttacacagctactgggc
gctgaagcggaaaacatcgacctctttgatcgactgcaactggaacacgttatcgctatc
tgccgtcaggcaaagtcgctttccgctgccggacgccagctttttgacgtttcgcgccaa
gggaaagccagcgtcaacgacgcggatcggctacgcaaatacctggcgcgttttaatctg
acgtgggaagccgtgcaggatcagcacagctccagttga
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