Ectobacillus sp. JY-23: MUG87_05905
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Entry
MUG87_05905 CDS
T09162
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ecto
Ectobacillus sp. JY-23
Brite
KEGG Orthology (KO) [BR:
ecto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecto03032
]
MUG87_05905 (topA)
03400 DNA repair and recombination proteins [BR:
ecto03400
]
MUG87_05905 (topA)
Enzymes [BR:
ecto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MUG87_05905 (topA)
DNA replication proteins [BR:
ecto03032
]
Prokaryotic type
DNA Topoisomerases
MUG87_05905 (topA)
DNA repair and recombination proteins [BR:
ecto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MUG87_05905 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
SAND
Toprim_2
zf_Rg
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UOY93654
LinkDB
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Position
complement(1143285..1145360)
Genome browser
AA seq
691 aa
AA seq
DB search
MSDYLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPKSQMGIEIQNRFTPKYITIRGK
GPVLKDLKTAAKKAKKIYLAADPDREGEAIAWHLAHTLHVDTTSDCRVVFNEITKDAIKE
AFKKPRAINTDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIEREK
DIQAFVPEEFWTIKADLVKGKDIFEAAFYGIDGSKIELTTEEQVNSVLARLQNNVFTVET
ITRKERKRNPAVPFTTSSLQQEAARKLNMRAKKTMMLAQQLYEGIEIGKEGTVGLITYMR
TDSTRISETAQTEVRGYIQDKFGEVFVSKEKRKEAKGNAQDAHEAIRPSSALRKPDDLKE
YLSRDQYRLYKLIWERFVASQMAPAVMDTMTVTLTNNGVQFRAHGSVVKFPGFMKVYVES
SDDGAEEKDRMLPELTEEETVFSKDMEPKQHFTQPPPRYTEARLVRTLEELGIGRPSTYV
PTLETIQKRGYVSLDNKRFVPTELGEIVIELILEFFPEVINIEFTANMESNLDKIEDGQA
QWVEVIEEFYQGFEKHLEKAEKEMREVEIKDEPAGEDCEECGNPMVFKMGRYGKFMACSN
FPDCRNTKAIVKEIGVECPKCSEGQIIERRSNKKKRIFYGCSEFPGCDFVSWDKPIGRKC
PKCEGMLVEKKLKKGVQVQCVSCDYEEEQQM
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattatttggtaatcgttgagtcgccggcaaaggcgaaaacgatagaaaaatat
ttaggaaaaaaatacaaggtaatagcgtctatgggacacgtgcgagatctgccgaaaagt
caaatgggcattgaaatacaaaatcgttttacaccaaagtacattacgattcgtggaaaa
ggtcctgttttaaaagacttaaaaacagctgcaaaaaaagcaaagaaaatttatttagca
gctgaccccgatcgtgaaggggaggcgattgcatggcacttagcgcacacgttacatgtg
gatacaacttcagattgccgtgtggtgttcaatgaaattacaaaagacgcaatcaaggaa
gcttttaaaaagcccagagctattaacacagatttagtagatgcacaacaggcacgtcgc
gtattggatcgtctggttggttataatattagtcctttattatggaagaaagtgaaaaaa
ggattaagtgcaggtcgtgttcaatcagtggctgtgcgtttaattattgaacgtgaaaaa
gacatacaagcatttgtaccggaagagttttggacaattaaagcggatttggttaaagga
aaagacatatttgaagctgcattttacggtatagatggtagcaaaatagaacttacgaca
gaagagcaagtaaatagtgtgctagcgcgtttgcaaaacaatgtattcaccgtggagaca
attactcgtaaagaacgcaaaagaaaccctgcagttccgtttacgacatcctccttgcag
caggaagcggcgcgcaaactaaacatgcgcgcgaaaaaaaccatgatgctagcacagcag
ttatatgaaggaattgagattggaaaagaaggcacagtcggtttaattacgtatatgcgt
acggattctactcgtatttctgaaaccgcacaaacagaagtacgtggatatattcaagat
aagtttggagaagtctttgtttccaaagaaaaacgaaaagaagccaaaggtaatgcacaa
gatgcgcatgaggcaattcgtccttcctcagcactgcgtaagccggatgatttaaaagag
tatttaagtcgggatcagtacaggttgtataagcttatttgggaacgttttgtagctagt
caaatggcacctgctgttatggatacaatgacggtaacgcttacaaataatggtgtgcaa
tttagggcacatggctcggttgtcaagtttccagggtttatgaaggtatatgtagaatcc
agtgatgatggtgctgaagaaaaagatcgcatgctaccggaactaacggaagaagaaaca
gttttttcaaaagatatggagccaaagcagcactttacacagcctccgccgcgctatact
gaagctcgtctagtgagaacattagaagaactgggtataggtcgtccttctacatatgtg
ccaacattggagacgatccagaagcgaggttacgtatctcttgataataagaggtttgta
ccgactgaattaggtgaaattgttattgaactgattttggaattctttccagaagttatc
aatattgaatttaccgctaatatggaaagtaacctggataaaattgaagatgggcaagca
caatgggtcgaagtaatagaagagttttatcaagggtttgaaaagcatctagaaaaagct
gagaaagaaatgcgtgaagtggaaattaaggatgagccggcaggagaagattgtgaagag
tgtggcaacccgatggtatttaaaatggggcgttatggtaagtttatggcatgctctaat
tttccagattgtaggaacacaaaagctattgtcaaagagattggtgtggaatgcccgaag
tgtagtgagggtcaaattattgaacgtcgtagcaataagaaaaagcgtatcttttatgga
tgtagcgagtttcccggatgcgattttgtttcttgggacaaaccgattggacggaagtgt
ccaaaatgcgagggaatgcttgtcgagaagaagttaaaaaaaggtgtgcaagtacaatgc
gtctcttgtgactatgaagaagaacagcaaatgtga
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