Ectobacillus sp. JY-23: MUG87_12860
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Entry
MUG87_12860 CDS
T09162
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecto
Ectobacillus sp. JY-23
Pathway
ecto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUG87_12860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecto03400
]
MUG87_12860 (mfd)
Enzymes [BR:
ecto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUG87_12860 (mfd)
DNA repair and recombination proteins [BR:
ecto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUG87_12860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOY91422
LinkDB
All DBs
Position
2503224..2506748
Genome browser
AA seq
1174 aa
AA seq
DB search
MLGLLERFYDSKEIATIISGVEKGLKEQLISGMSNSARTLLMAALYKQTKKSQLIVTHNL
FQAQKVHDDLLALLGERDVLLYPVNELIASEIGVASPELQAQRIEVMNRLLRDEPVIIVA
PVAGLRRYLPAKRVWEAYQKQIHVGNDLELEDLARSLVEMGYERKSMVEAPGDFSVRGGI
LDVYPLTEELPVRIEFFDTEVDSIRSFSIEDQRSQEKKLSISFGPASEFVFTKEQREHGT
KRLEESLAQALADTKDIRLKEQIADNVGRELEYLKNGQSIEQIFKYLSLYYEQPYSLVDY
LPKDGIVILDEVSRIQETAEHLEKEEGEWYISLLEEGTVVRGLSFSHDFFKELQQKKRSY
LYLNLFLRHIPHTSPQNIVNMTCKTMQDFHGQMQLFKTELERWQKGRYTVVLLAADEERI
KKQLQILQDYGLEADVGSVNIASDRIQIIQGALHAGFELPMQKLAVITEKELFNKKVRKP
QRRQKLSNAERIKSYSELKPGDYVVHVNHGIGKFYGIETLEINGVHKDYLHIKYQGNDKL
YVPVEQIDQVQKYVGSEGKEPKIYKLGGTDWKRVKTKVEKSVQNIADDLIKLYAEREASK
GYAFTPDTAEQREFETSFPYQETEDQLRSITEIKKDMERERPMDRLLCGDVGYGKTEVAI
RAAFKAVMDGKQVAILVPTTILAQQHYETIRERFQDYPIQIGLLSRFRTRKQQNETTKGL
KDGTIDVVIGTHRVLSKDIVFKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNAGLVREAIERELAREGQVYFLYNRV
EDIERKAEEISMLIPDARVTYAHGKMNESELESVMLAFLDGQYDVLVSTTIIETGVDIPN
VNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYAYFTYKKDKVLSEVAERRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIETRRGTTGAEAHFEVE
MDLEVDAYLPDSYISDSKQKIIMYKHFRSVSSVEDIEELQEEITDRFGDYPQEVGYLLQI
SMLKVLAVKEKIESIKQSKQEVTFLFSESASRNLDGGKLFMLTNSISRSMRLGMEGAKLK
IVMDVKGIEPSKWLSQIETLIRGLDDAKKEAINA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgctaggtttattagagcgtttttatgatagtaaagaaatagcaacaattattagtggg
gtagagaaaggcctgaaagagcaacttatttcaggtatgtccaattctgctcgtaccttg
ctgatggcagctttgtataaacagacgaagaagtctcaactcatagtcacccataatttg
tttcaggcccaaaaggtacatgatgatcttctagccttgttaggagagcgggacgtgctt
ttatatcctgtaaacgagctaattgcttcggaaattggtgtcgcaagtcctgaactacag
gcgcaacgaattgaagtgatgaatcggctgctacgtgacgagccggttattattgtagcg
ccggtagctggcttacgtcgctatcttcctgcaaagagagtttgggaagcttatcaaaaa
cagattcatgtaggcaatgatttagagttggaagatttagcaaggtctttggtagaaatg
ggatatgaacgcaaatctatggtggaagcgcctggagattttagtgtgcgcggcggaata
ttagatgtataccctctaacagaggaactgccggtacgaatagaatttttcgatacagaa
gtcgactccattcgctcattcagtattgaagatcaacgttcgcaagaaaaaaaactatcc
atctcttttgggcctgcttccgagtttgtttttacaaaggagcagagagagcatggaaca
aagcgcttagaagaaagtttggcacaagcattggcagatacgaaagacataagattaaaa
gaacaaatcgcggacaatgtgggacgtgagctggaatatttaaaaaatggccaatctatt
gagcaaatatttaaatatttatctctctattatgagcaaccttatagtttagtagactat
cttcctaaagatggtatcgttattttagacgaggtatcaaggattcaagagaccgctgag
catcttgaaaaagaagagggagaatggtatatatctttacttgaagaaggtacagtagtg
cgagggttgtcgttctctcatgatttctttaaggagttgcagcaaaaaaagcgaagttat
ctatatttaaacttatttttaaggcatattccacatacaagtccccaaaatattgtcaat
atgacttgtaaaacaatgcaagattttcatgggcaaatgcaactttttaaaacggagcta
gaacgttggcaaaaaggccgttatacagttgttttgcttgcagcagatgaagagcggata
aaaaaacaattacaaattctacaggactacggcttagaagccgatgtgggatctgtgaat
atagcaagtgatcgtattcaaattatacaaggagcgttgcatgcgggatttgaattgcca
atgcaaaagctcgctgttattacagaaaaagaattgttcaataaaaaggtgagaaagccg
cagcgtaggcaaaaactttctaatgcggagagaattaaaagctattcagaattaaaacca
ggtgattatgttgttcatgtcaatcacggcatcggaaagttttatggtattgagacatta
gaaattaacggtgttcataaagactatttgcatattaaatatcagggtaatgataagctg
tatgtacctgttgaacagattgatcaagttcaaaaatatgttgggtctgaagggaaagag
cctaaaatatacaagctaggtggaacggactggaagcgtgttaaaacaaaggttgaaaag
tcagttcaaaatattgctgatgatttaatcaaattatacgcagaacgcgaagcttctaag
ggatatgcgtttactccggacacagcagagcaaagggaatttgaaacctcgtttccttac
caagagacagaggatcaattgcgctctattactgaaattaaaaaggatatggaacgggag
cgaccaatggatcgtttgctctgcggtgatgtaggttatggcaagacggaggttgctatt
cgtgctgcttttaaagctgtaatggatgggaaacaggttgccattttagtacctacaact
attttggcacagcaacattacgaaacgattcgtgagcgctttcaagattatccgattcaa
attggcttgctcagtcgtttccgtacaaggaaacagcagaacgagacaacaaaaggctta
aaagacgggacaattgatgttgtaattggtacgcatcgagttttatctaaggatattgtg
tttaaagatctgggtttgcttattattgatgaagagcagcgctttggtgtaacgcataaa
gaaaaaattaagcaaatgaaagccaatattgatgtattaacactaactgctacaccgatt
ccacgtaccttgcatatgtctatgctgggcgttcgggatttatcggttattgaaacgccg
cctgaaaatcgttttccagtacaaacgtatgttgttgaatataatgctggtctagtccga
gaggcgattgaacgagaactagcaagagaaggacaggtttactttttatataatcgtgta
gaggatattgagagaaaagctgaagagatttccatgctaattccagatgcgcgtgttact
tatgcacatggaaagatgaatgagagtgaattagagtctgttatgcttgcgttcttggat
gggcaatatgatgtcttggtaagtacaacaattattgaaacaggtgtagatattccaaat
gtaaatacattaattgtacacgatgccgatcgaatgggattgtcacagctatatcagctt
cgtggtcgtgttggtcgctccaaccgagttgcttatgcatactttacctataaaaaagat
aaggtgctttctgaggtcgcagaacgcagattacaagctatcaaggaattcacggagctt
ggttcgggcttcaaaattgctatgcgtgatttatcgattcgaggcgctggtaatttactt
ggtgctgaacagcacggctttattgattcagtaggttttgatttatattcacaaatgctg
aaagaagcaattgaaactcgtagaggcacaacaggtgctgaagcacactttgaggtagaa
atggacctagaggtagatgcatatttgccagatagctatatctcagatagtaagcaaaaa
ataattatgtataagcatttccgaagtgtatcttccgttgaggatattgaggagctccag
gaagagataacagacaggttcggtgactatccgcaagaagtgggctatttattacaaatt
tctatgttaaaggttttggcagtgaaagagaaaattgaaagcattaagcaaagcaagcaa
gaggtaaccttcctattttctgaatcagctagccgtaatttagatggaggaaaattattt
atgctaacaaactccattagtaggtctatgcgcttaggtatggaaggagccaaactaaaa
attgtgatggatgttaaaggaatagagccttctaaatggctttctcaaattgaaacgctt
ataagaggattagatgatgcaaaaaaagaagcaataaatgcctaa
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