Ectobacillus sp. JY-23: MUG87_14110
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Entry
MUG87_14110 CDS
T09162
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ecto
Ectobacillus sp. JY-23
Brite
KEGG Orthology (KO) [BR:
ecto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecto03009
]
MUG87_14110 (rlmD)
Enzymes [BR:
ecto01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MUG87_14110 (rlmD)
Ribosome biogenesis [BR:
ecto03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MUG87_14110 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
PrmA
Methyltransf_11
PCMT
Methyltransf_4
RrnaAD
Ubie_methyltran
Methyltransf_12
Methyltransf_23
TPMT
N6_Mtase
Motif
Other DBs
NCBI-ProteinID:
UOY91618
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Position
2739648..2741024
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AA seq
458 aa
AA seq
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MSVKMTPPVGKNEYIDVVFEDLTHDGAGVAKVNGYPIFVAQALPEEHATIKIIKVKKNFA
FGRLIELHKKSPYRQEAPCAVYKQCGGCQLQHLSYEGQLKAKEKQVRDVMRRIGGLEDVP
IHPVLGMEKPWEYRNKAQVPIGDREGGLVAGFYRQGTHEIINMEKCLIQIEENDILIQAV
KRICEKHGVQAYREEEHTGTLRHVMARYGQVTGEIMLVFVTRTGDLPQQQQIIDEIVVQF
PNVKSIVQNVNKKRTNVIFGDTTKVLYGSEYIYDCIGDIKFAISARSFYQVNPIQTKVLY
DKAMEYAALSGQEEVIDAYCGIGTISLFLAQKAKTVYGVEIVPEAIEDAKRNAALNGMTN
VEFAVGEAETVIPNWYKQGIHADVMVVDPPRKGCDDSLLETIIDMKPKRVVYVSCNPATL
ARDLRILEDGGFKTREIQPVDMFPQTMHCEAVAVLESV
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtaaaaatgacaccccctgttgggaagaatgaatatatagatgtagtttttgag
gatttaacacatgatggtgctggtgttgcaaaggtgaatggctatccgatttttgtagca
caggcgctaccagaagagcatgcgacaatcaagattattaaggtaaaaaagaatttcgcg
tttggccgcttgattgagctgcataagaaaagcccctatcgtcaggaagctccctgcgct
gtgtataagcaatgcggcggctgtcaacttcagcatttgagctacgaaggtcagctaaaa
gcaaaagaaaagcaagtacgtgatgtgatgcgccgtattggcggcttggaagacgtgccg
atccatccggtgttaggtatggaaaagccctgggagtatcgaaacaaggcccaggtgcca
attggtgacagagagggcggactagttgccggtttttatcgccagggtacacatgagatt
attaacatggaaaagtgcttaattcaaattgaagagaacgatattttgattcaagcggta
aagagaatttgcgaaaagcatggtgtacaagcttatcgtgaggaggagcacacaggtacg
ctacgacatgtgatggcgcgctatggacaagtgaccggtgaaattatgcttgtgtttgtg
acacgtacgggagatttgccgcagcagcagcaaatcatcgacgagattgtcgtacaattt
ccaaatgtgaaatccatcgtgcagaatgtaaataaaaagcgtacgaatgttatttttggt
gatacaacgaaagtattgtacggctcagaatatatttatgattgtatcggtgatattaaa
tttgcaatttcagcccgctccttttatcaggtcaatccaatacaaacaaaggtattatac
gataaggcaatggagtatgctgcacttagtgggcaagaagaggtaattgatgcctattgt
ggtatcggaaccatttctcttttcttagcgcagaaagccaaaacggtgtacggtgttgaa
attgttccggaagcaattgaagatgcgaagcgtaacgctgcactgaatggaatgacaaat
gtagagtttgcggtaggagaagcggaaacagtaattcctaattggtataagcaaggtatt
catgccgatgtgatggtagttgatccacctcgtaagggctgtgatgactcgcttttggag
actattattgatatgaagccaaagcgcgttgtatacgtgtcttgtaatcctgccacactt
gctcgggatctacgcatcttagaggatggcggctttaaaacgcgagagattcaaccggtt
gatatgttcccgcaaacaatgcattgtgaagcggtggcggttttagaaagtgtatga
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