Encephalitozoon cuniculi: ECU04_0910
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Entry
ECU04_0910 CDS
T00105
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ecu
Encephalitozoon cuniculi
Pathway
ecu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECU04_0910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecu03019
]
ECU04_0910
03041 Spliceosome [BR:
ecu03041
]
ECU04_0910
03009 Ribosome biogenesis [BR:
ecu03009
]
ECU04_0910
03016 Transfer RNA biogenesis [BR:
ecu03016
]
ECU04_0910
Enzymes [BR:
ecu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECU04_0910
Messenger RNA biogenesis [BR:
ecu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
ECU04_0910
Spliceosome [BR:
ecu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
ECU04_0910
Complex C
U4/U6.U5 tri-SnRNP related factors
ECU04_0910
Ribosome biogenesis [BR:
ecu03009
]
Eukaryotic type
Pre-60S particles
Helicases
ECU04_0910
Transfer RNA biogenesis [BR:
ecu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
ECU04_0910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
858922
NCBI-ProteinID:
NP_584774
UniProt:
Q8SS39
LinkDB
All DBs
Position
IV:complement(116744..119545)
Genome browser
AA seq
933 aa
AA seq
DB search
MIDDKYFDVFNDKSTLQAIAVPERLERRTTVTDRIDRNGTRHEAVVPVGAAYTLLPKQFC
KPAAKNYLFELDDFQKISVCSLERDESVLVSAHTSSGKTVVAEYAIAMSLRSNQRVVYTS
PIKALSNQKYRELLSEFSDVGLMTGDVTINPTASCLVMTTEILRNMLYRGGEVVREIHWI
IFDEIHYMRDKERGVVWEETIILLPKHVRMVFLSATIPNALEFAEWISHIQSQVVHVVYT
EKRVTPLVHYFRSNKLYKIKDAKFHKSNFLSAMRSIRKRNVGPREVGEAIGDASLPVVVF
SFKRKDCERFAMKLDGRYLTDEEARTVQTIFTNAIMSLRKEDREIPIIQNILPLLMRGIG
IHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDGEAMRLVS
SGEYIQMSGRAGRRGIDSMGIVISIISEPITYKEASRLFSASSDNLVSAFRLTYNMLLNL
MRVEGLDPLYLISRSFHHFQSYKKALAEEETLHLMYRRLEDIEPNETACLYRKREEKKVE
RGKRLVEAFGKYLKKGRVVDLFIPRNGPSITIRNAIVSKAREKVQCMVGTEEGVYMCSFP
LHYIDCVYDIRVKLDVRVFTKSFEKIAVRDELDEEIEEIEGKILSMDPEWSFDFCVLCGK
SSVGCLVSCSRELIDSEAVIVQMPENTKRYGESLEAARYPSTEMKSNMDGARAFFVNETL
RQRYLEKLLELNSLKEIYHMRECKKMIEVLKKLEYCDDTTVLIKGRMACEISSGDELVLT
EMIFNGDFAGIPVEHFVPLLSCIVFEEWDSDSFVLSDENKLYYRLLSDSVEKVCKVLKSC
GIEIDPAAYLKRFSYELMDVVRMWVCGCTFISICSKTSIFEGSIIRTFKRLEELLRQLSS
AARVIGNTELENMFALGIVKIKRDIVFANSLYI
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatgacaaatacttcgatgtctttaacgacaagtcgacactgcaagccattgcc
gttccggagaggctcgagcgaagaacaacagtaacagacaggatcgataggaacgggacc
cgccacgaggcagttgttcccgtcggagctgcatacacgcttctgccaaagcaattctgc
aagccagctgcaaagaactatttgtttgagctcgacgacttccagaagatttctgtgtgc
agcctcgagagagatgaaagcgtccttgtgagcgcccacacaagctctggaaagactgtt
gttgcagagtatgccattgcaatgtcgctgaggagcaaccagagggttgtgtacacgtct
cccatcaaggccctgtccaaccagaagtacagagagcttctttccgagttcagcgacgtg
gggctgatgacaggggatgtcaccatcaaccccacggcatcctgcctcgtgatgaccacg
gagattctccggaacatgctctatagagggggcgaggtcgtgcgtgaaatccactggatc
atctttgacgagatccactacatgagggacaaggaaagaggggttgtgtgggaggagacg
atcatactgctcccaaagcatgttaggatggtgtttctcagtgcaacaattccaaatgca
ctggagtttgcagaatggatatcccacatccagagccaggttgtccatgttgtgtacacc
gagaagagggtgacgccgctagtccactacttccgtagcaacaagctgtacaagatcaag
gatgcgaagttccacaaatcgaactttctgtctgcaatgcgatctatccggaagaggaat
gttgggcctcgggaggtgggagaggcgattggggatgcatctcttcctgttgttgtcttt
tcgttcaaaagaaaggattgtgaaagatttgcaatgaagcttgacgggagatacctgaca
gacgaggaggcaaggacggtgcagacaatcttcaccaatgcgattatgtctcttaggaag
gaggacagggagattccgattatccagaacatccttcctcttcttatgagggggattgga
atccatcactctgggcttctgcccatcatcaaggaggttgttgagatactgtttcaggag
gggctgctcaaggttttgtttgcaacagagacgttttccattgggctgaacatgcctgca
aagtctgttgtgtttactgcactgaagaagtttgatggagaggccatgaggctggtgagc
tctggagagtacatccagatgagcggcagggcgggacggagggggatagacagcatgggg
attgtcataagcataatctccgagcccatcacctacaaggaggccagcaggcttttctct
gcatcctccgacaatcttgtgagtgcattccggctaacatacaacatgctgttgaatctg
atgagggttgagggccttgatcctttgtacctgatcagcagaagcttccaccacttccag
tcgtacaagaaggcccttgcggaggaggagaccttgcacttgatgtaccgtcgactagag
gacatcgagcccaacgagactgcatgtctgtatcggaagagagaggaaaagaaggttgaa
aggggtaagaggctagtggaggcgtttggcaagtacctgaagaaggggagggtggttgat
ctgttcataccgaggaatgggccgtcaatcacaatccggaacgcaatagtcagtaaggct
agggagaaggtccagtgcatggttgggaccgaggagggtgtgtacatgtgtagctttccc
ctgcactacatcgactgtgtatatgacatcagggtgaagcttgatgttcgggtgtttacg
aagagctttgagaagattgcagttagggatgagcttgatgaggagatagaagagatagag
gggaagatactgtcgatggatccggagtggagcttcgacttctgtgtactgtgtggaaag
tcctctgtgggatgcctggtttcgtgcagtagggagcttattgactctgaagcagttata
gtccagatgcccgaaaatacaaagaggtatggagagagtcttgaggccgccagatatccg
tctacagaaatgaagagcaatatggatggggcaagggcgttctttgtgaacgagacactg
aggcaaagatatctggagaagcttctggagctgaacagtctcaaggaaatctaccacatg
agggagtgcaagaagatgattgaggttctaaagaaacttgagtactgcgacgacacaact
gtgcttatcaaggggagaatggcatgcgagatttcgtctggcgatgagctagtgctaaca
gagatgatattcaacggggactttgcagggattccagtggagcatttcgttcccttgctt
tcatgcattgtgtttgaggagtgggactcggacagctttgttctgagcgatgagaacaag
ctctactataggctgctatccgactctgtggagaaggtgtgcaaggtcttgaagtcgtgc
gggatcgagatagaccctgcagcatacctcaagagattctcctacgagctgatggatgtt
gtcaggatgtgggtctgtggatgcacatttatcagcatctgcagcaaaacaagcatcttc
gagggcagcatcatcaggacatttaagcggctcgaggagctactcaggcagctaagtagt
gcagccagagtcataggaaacactgaactggagaatatgtttgctctggggatagtgaag
atcaaaagagacatagtctttgccaactctctctacatctaa
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