Encephalitozoon cuniculi: ECU09_1640
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Entry
ECU09_1640 CDS
T00105
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ecu
Encephalitozoon cuniculi
Pathway
ecu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECU09_1640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecu03019
]
ECU09_1640
03036 Chromosome and associated proteins [BR:
ecu03036
]
ECU09_1640
Enzymes [BR:
ecu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECU09_1640
Messenger RNA biogenesis [BR:
ecu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
ECU09_1640
mRNA degradation factors
5'-3' decay
Decapping complex
ECU09_1640
Chromosome and associated proteins [BR:
ecu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
ECU09_1640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
860503
NCBI-ProteinID:
NP_001402417
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All DBs
Position
IX:189457..190920
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AA seq
487 aa
AA seq
DB search
MKSMIEGVKKDGKKGRRNDRKDSWDKDGFTQRGRAEKKPVDLAKIQGIQGQIGIGKNKGD
GNRLDCGMDKEEAEDGKDIMRCRHLSPGGGGMKRLLSEDVRETEGIGWESLGLGPVLLKR
IRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIIL
VPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVE
KRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQMLLYSATFPYFVTGFIRRY
MKNPLCINLMKELAPVGVKQFYTYVKPSEKLLCLKSLLLRLSINQCVIFCNSIKTVELLA
MKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDI
SKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGKEISPLSDKGLSRLHES
NIDRNQG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcatgatcgaaggcgtgaagaaggatgggaaaaaagggagaaggaatgatcgg
aaagactcttgggacaaggatggcttcacacagagagggcgtgcagaaaagaagcctgtt
gatctagctaagatacaaggaattcagggtcagataggaataggaaaaaacaagggagat
ggcaatcgtctcgattgtgggatggacaaggaggaggcagaagatggcaaggacatcatg
cgctgcaggcacctttctccgggaggaggtggcatgaagaggttgctgtcggaggatgta
agagaaacagagggcataggatgggagtcacttggactcgggccggtgctgctgaaaaga
atacgcgatattggctatgactttccatcgcctgtccaggtggcatcgattccacatgtc
ctaggaggaaagaacctgttggtcagatcgaagaatggaaccggaaagacagcatcttac
atagttcccatgctcaacatgataaattcctcagagctgagcatccagggaatcatattg
gtacccatcagagagcttgctctacagatatcaagaaatgtcaaaagaatgtctgagggc
actggggtgatatctgcgcctgtggttggagggactagcatgcaggacgacatcataagg
gtgtccaatggtgttcacgtgatggtgggaacgccaggaagaattgtggacctggttgag
aagagggttgggacgctttcgaaaagagtgatcttggtgtttgatgaggccgacaagctg
cttgatgtgacatttggagagactgtcacaaagcttctagatctgcttccaagggaaaag
cagatgctactgtactctgcaacctttccttattttgttaccgggtttatcagaagatac
atgaagaacccgctatgcattaatctgatgaaggagctcgctcccgtaggagttaagcag
ttctatacatatgtgaagccctctgaaaagcttctatgcttgaagtcccttctcttgaga
ctaagcatcaaccagtgtgtgatcttctgcaatagcatcaagactgtggagcttcttgcc
atgaaaattaccgagatggggcttccttcgtacttcatccactcgaagatggctcaggaa
gacaggaatatagtgtttcacaacttcctgaaagggaagtgtaagattctggttgcaact
gacctcatcacacgtggagtggatgctccaaacacaaactacgtaatcaacttcgacatt
tctaagtctcccgagtcctatcttcacaggattggacgggctggaaggtttggagcccct
ggagttgcaataagtttggttaccacggaagaaaaggaaatgctgatggacatagaggca
aagcttgggaaagaaatatctcctctttcggataagggtctgagccgcttacatgaaagt
aacatagacaggaatcaaggataa
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