Encephalitozoon cuniculi: ECU10_1340
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Entry
ECU10_1340 CDS
T00105
Name
(RefSeq) exosome non-catalytic core subunit RRP4
KO
K03679
exosome complex component RRP4
Organism
ecu
Encephalitozoon cuniculi
Pathway
ecu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECU10_1340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecu03019
]
ECU10_1340
Messenger RNA biogenesis [BR:
ecu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
ECU10_1340
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
ECU10_1340
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
DUF6262
Motif
Other DBs
NCBI-GeneID:
859899
NCBI-ProteinID:
NP_586249
UniProt:
Q8SUC4
LinkDB
All DBs
Position
X:complement(183584..184255)
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AA seq
223 aa
AA seq
DB search
MKTLLLPGEDVLESEGYIRGHGTQLRGSCIASTYFGRPRITNKLVTVDPMFPLKYSPEVG
DVVVGRVIGIHNKKWKMELNSKADVYLGLSAINLPGTVQRRKQESDEISMRDFFEIDDLV
VSEVQKVGRNGVAALHTRSDKYGKLGPGLLVFVPHFLLEPLKTRFLSNGSVEVIVGCNGY
IWVGRGCKDSSTFTEITSVVSGIKAMVSQNKRVNVERLLKKTP
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgaagactttgcttcttcctggagaggatgtactagagtctgaggggtacataaggggc
catggaacacagcttagaggaagctgcatagcgtcgacctactttggaaggccccggatt
accaacaagcttgtcactgttgatcctatgtttcccctgaagtacagtccggaggttgga
gatgttgttgtgggcagggttattggaatccataacaagaagtggaagatggagctgaac
agcaaggcagacgtctacctggggctgtctgccatcaaccttcccggaacggttcagcgc
cgcaagcaggagtctgacgagatatccatgagggacttttttgaaatcgatgacctggtc
gtatctgaggtacagaaggttggcagaaatggtgttgcagcgctgcacacaaggagtgac
aagtacgggaaacttggaccagggctgctggtgtttgtgccccactttctactagagccc
cttaaaaccagatttctttcgaacggcagcgtcgaagtcattgttggatgtaatggctac
atctgggttgggagaggatgcaaagactcctctacatttacagaaataaccagtgttgtc
tctggaataaaggcgatggtatcgcaaaacaaacgcgtcaatgtggagagattgcttaag
aaaacaccgtga
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