Entomospira culicis: PVA46_04855
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Entry
PVA46_04855 CDS
T08829
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecul
Entomospira culicis
Pathway
ecul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PVA46_04855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecul03400
]
PVA46_04855 (mfd)
Enzymes [BR:
ecul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVA46_04855 (mfd)
DNA repair and recombination proteins [BR:
ecul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PVA46_04855 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WDI36657
LinkDB
All DBs
Position
1021927..1025313
Genome browser
AA seq
1128 aa
AA seq
DB search
MPVEFSSFLTTMKKSPDVATLLDKIKHDYATIHAITGLKKSWLALFLSLEPFTHAPVIIT
SSHQSAQTLSEDLELLGQKSITFASIQQRLYDASHSFGERTAMLAQLPLAQETIIIPLRT
LLLKINQPEDLLASTITLKKRSPVDPPKLAQQLTQMGYSRTNRVLVHGEFAQRGDLIDIF
PYAQEYPMRIQCDFDIIETIKTFDPDDQRSLMAIDELHIYPTTPILPLDEEELFLKSKAI
WQANHTGNSELSYEEFQLRKALFSLMLEENPASIISYIDPKRPILLHDFDALTTVAETFA
KEVEALYKEAIRAGHTVPAPQYLLFTLGDLLQPYASRTIQLKNFSDAKTPAHSIQYEESR
SYFGNVNFLKEEIQQLSKSGYKIAIFSENPEQALRITTLLSDIIDLVTIIPFELSSGFTL
VQAKVMIICEHEIFGRKRREHKVARKRVESSVIDSFVELNVGDPIVHVNYGIGLYQGIER
MKAAGSERDYITLEYQDGDKIFVPIEQVNLIQRYIGSSGDMPRLDKIGGRSWSVKKSRAQ
KSAEELSGFLVDLYAKREASRGFSFAINDPMLTQMEREFEAHFPYQETVDQLTVMEEIHH
DMELQKPMDRLVCGDVGFGKTELAMRSAMRSVLCGKQCAVLCPTTILAEQHYENFCKRFE
QFDFITIKLLSRTVDRKEQRAILADLAEGKIDIIIGTHRILSKDIIYKNLGLLIVDEEQR
FGVKDKEKIKNLKTEVDCLTLSATPIPRTLHMSLVKIRDLSMLKTPPANRKPVETFVHEF
EPDLIAKAIRKELERQGQIFYLHNRVESLESIRQFIRELVPEASVEFAHGKMTGEEMDEV
MHRFIQGGFQVLLSTTIIESGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRIAYAY
LLYPERSALSELAMKRLQIINDFTELGSGFKIAMKDMEVRGAGNLLGPEQSGEIQAVGFD
LYLRLLDEAIRTRMDNTQEEEIESYLELEYTGFIPESYISNTMEKMEVYKKIALITTQEE
SESLHAELLDRFGKIPDEVYSLLSLAEIRIIARQLKIRSIRERNGWAEVEFAKFQAININ
TLMRVIQESHGKLKPSPTNPAAVLLETGKIDLQAKSEFIRDRLLQITR
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaattttcttctttcttaacgacaatgaaaaagagccccgatgtcgccacg
ttgcttgataagatcaagcatgattatgcgacaatacatgccattacgggtctcaaaaag
tcttggctggcgctctttctatcgctagaaccctttacccacgcgcctgtcatcatcaca
tcgagccaccagagcgcccagaccttgagcgaagatctcgagcttttaggacaaaaaagc
attacctttgcctcaatccagcaacgtctatatgatgcctcgcacagttttggcgagcga
accgccatgcttgcccagctacctctggcacaagagaccatcattattccgttgcgcacg
ctcttgcttaagattaatcaaccagaagatctcttggcaagtaccatcaccctaaagaaa
aggtcgccagttgatccacccaagctcgcgcaacaactcacccagatgggctatagccga
accaatcgcgtcttggtgcatggtgaatttgcccagcgtggcgatcttatcgatattttc
ccctacgcccaagagtacccgatgcggattcagtgcgactttgacatcatcgagacgatt
aaaaccttcgatcccgacgatcagcgcagtcttatggctatcgacgagctccatatctac
cccaccacgcccattcttcccctcgacgaggaggagcttttccttaagagcaaggcgatc
tggcaagccaaccataccggtaatagcgagctctcttacgaggaatttcaactaagaaag
gcgctctttagcctgatgctagaggaaaatcccgccagtataatcagttacatcgacccc
aaacgccccattcttctgcacgactttgatgcccttaccaccgtcgccgagaccttcgcc
aaagaggtggaagcgctctataaagaggcgattcgtgccggacacaccgtgcctgcgccc
caatatctgctctttactttaggcgatctgctccaaccctacgcctcgcgcacgattcaa
ctaaaaaacttctccgacgcaaaaacccccgcccattccattcaatatgaagagtcgcgt
agttactttggcaatgtcaacttcctcaaagaagagatccaacagctcagcaaatcgggc
tataaaattgccatctttagcgaaaatcccgaacaagccctacgtattactactttgctt
agcgatatcatcgacctcgttaccatcatcccttttgagctaagcagtggctttactctc
gtgcaggccaaggtgatgatcatttgcgagcatgagatctttgggcgcaagcgacgcgaa
cataaagttgcgcgtaagcgcgtggagagcagtgtcatcgatagctttgtcgagcttaat
gtcggcgatccaattgtccatgtcaactacggaattggtctctaccaaggcatcgaacgt
atgaaggctgctggtagcgagcgcgactacatcacccttgagtaccaagatggcgataag
atctttgtccctatcgaacaagttaatcttattcaacgatacattggttcgtcgggagat
atgcctcgcctcgataagattgggggacgatcatggagcgtgaagaagagtcgcgcgcaa
aagagtgccgaagagctctcgggatttttagtcgatctctacgccaaacgcgaggcatcc
cgtggcttctcgtttgccatcaacgatccgatgctcacccaaatggagcgcgaatttgaa
gcgcatttcccctaccaagagacggtcgatcagctcaccgttatggaagagatccatcac
gacatggagctacaaaaaccgatggatcgtctggtttgtggcgatgttggctttggtaag
accgagcttgccatgcgttctgctatgcgatcggtgctctgtggcaagcagtgtgcggtc
ttgtgtcccaccaccatcctcgccgagcaacattatgaaaatttttgtaagcgtttcgaa
caatttgattttatcaccattaaattattgagtcgtaccgtcgatcgcaaagagcaacgc
gccattcttgccgatttagccgaagggaaaattgatatcatcatcggcacacatcgtatt
ttaagcaaagatattatctacaaaaatttagggctgctgatcgtcgatgaagagcaacgc
tttggtgtaaaggacaaagagaagatcaaaaatctcaaaacggaggtcgactgcctcacc
ttgagcgccacgcccattccgcgcacgctgcatatgagtttggtaaagattcgcgacctc
tcgatgctcaagacaccaccagccaaccgcaaacccgtagagacctttgtgcacgagttt
gaacccgatctcattgccaaagccatccgcaaagagcttgagcgacaaggacaaatcttt
tatctacacaaccgtgtggagagcttggagagtatccgtcaatttatccgcgagcttgtg
cccgaggccagtgtcgaatttgcccacggcaagatgaccggcgaagagatggacgaggtc
atgcatcgctttattcaaggtggatttcaagttttgctaagcaccaccatcatcgaaagc
ggtatcgacatccccaatgttaataccatcatcatcgaccgtgccgatatgtatggagtg
agccaactctaccaattacgtgggcgcgtggggcgtagcgatcgcattgcctacgcgtat
ctcctctaccccgaacgatcggcgttgagcgagcttgccatgaaacgcctacagatcatc
aacgactttaccgaactgggatcgggctttaaaatcgcgatgaaagatatggaagtacgt
ggtgcaggcaatctcttagggcctgagcagtccggagaaattcaagccgtcggctttgat
ctctacttacgcctcctcgacgaagcgatacgtacacgcatggacaacacccaagaagaa
gagatcgagagctaccttgagctagaatacaccggatttatccccgaaagctatatcagc
aataccatggagaagatggaagtctacaaaaagatcgccctcatcaccacgcaagaagag
agcgagagtctgcatgccgagcttcttgatcgctttggtaagatccccgatgaggtctat
agtctgctctccctcgctgagatccgcattattgcgcgtcagctcaagatccgtagcatc
cgtgaacgtaacggctgggcagaggttgaattcgccaaatttcaagccattaacatcaac
accctcatgcgtgtcattcaagagagccacggcaagctcaagcccagccccaccaatccc
gccgccgttctccttgaaaccggtaaaatcgatcttcaagccaagtccgaatttatccgc
gatcgcctcctacaaatcactcgctaa
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