Entomospira culicis: PVA46_06725
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Entry
PVA46_06725 CDS
T08829
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecul
Entomospira culicis
Brite
KEGG Orthology (KO) [BR:
ecul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecul03019
]
PVA46_06725 (hrpA)
Enzymes [BR:
ecul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVA46_06725 (hrpA)
Messenger RNA biogenesis [BR:
ecul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PVA46_06725 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
HA2_N
ResIII
AAA_22
Helicase_RecD
nSTAND3
MA3
Motif
Other DBs
NCBI-ProteinID:
WDI37006
LinkDB
All DBs
Position
1425608..1429483
Genome browser
AA seq
1291 aa
AA seq
DB search
MKASQKQHIRQWSIERQKERWAKRPALLYPDNLPILQIKEEILAQLKTHQVLIIAAETGS
GKSTQLPKILLEAGMGKHGKIACIQPRRIATTSIAKRIAYELKENLGQSVGYRIRFDDKS
HPQTFIQVMTDGMLLSEIHHDHHLLEYDAVIVDEAHERSLNIDLLLGLLKKILVHRPHFK
ILIASATIDTERFSTFFHQAPILLAKGRHYVVEIRYQEPTHKEEDILEQALRALESIALE
STSDDVLIFLPTEDFIKNFIELAKKASSKEKRTFLPLYARLSQSEQQLIFEHVEGRKVIV
ATNIAETSITLPNIRYVIDAGLARINQYSAQSRIQNLPIVPISQASANQRAGRCGRVSNG
ICIRLYSEEDFHSRAPHTEPEIKRANLAETILRMMAMHIKEPEAFEFIDQPQQRLFNEGF
KTLFELQAIPSLKKSQRKLTPLGRAMSHLPLDPRLARMLIAADEEGALEEVTIIAAALSV
MDLRSVPEDKREVAKAIHQTFHQSASDLLWYLQLYDKAIERKVISQNQLKRFCQEQYLHP
MRVNEWLSLTEQIRNLMQERGYKPSAVGKERPWQGATKERFPIGYIAIHRAILTGYLSQI
GVYQPAEEKQTYKKNQKDRPKKQAHYLDMRMQEFSLFPTSSLLSQGWQWVFATKMWRTSR
LFAREVASIDPQWLEDLAKHLIQKRASLPVYSEKSQEVVCTETHYLYSYPIAQYPNRSYL
AYNPEQATLLFVTQALTQPEMITTLLEEELFAFLRHNVALQESLATSQAKLRRETILLDK
EAIVQFYLPKMKGIASVVALRKKLQQDLAWEASLYLKESDLAIDPDLLAELQAYPSQVIV
EEQAIVMEYRFAPNQPTDGVTAILTPKQVAELTDMDALLWQPMGLFVEKITAMIKALPKP
SRIKLHPTAQSVKTIHQSMPKNGNLFTQLQHFCQEAFHVQISKELWQEAYGKIEDRLKMH
YAVRHTPNEEDDLARAEELGSLKKLSFSQAKAQDFAQLAKRWHQENLQTWPTHHPTIPPV
IAVTNSAGEVYGQAYPALFYHDNTEQISLKLFEDRPSAENAHLAGIEALVLKLLKSELSA
LKKNFQLKERHPHLGYWASYKEANRLFENYTRMQYVRLGAIRTQQAFEALDSATARQALW
QDVAQDFTAFTTSLELYHEAREKLSRAKSKGNSLPDLERLEQNLAFLAGKSAWLWMSQAK
VRRLPQLLKIWHLRFDRALANLPKDREKALPFAPYHQKIHHYSTINPSHIQIELLKQLSH
ILYEVELKQLLPESKNLLFSKKELEEIAIML
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatcccaaaaacaacatattcggcagtggtcgatagagcgacaaaaagagcgt
tgggctaagcgtccagcgcttctctatcccgataatctccctattctccagataaaagaa
gagattcttgctcagcttaaaacacatcaagtactcatcatcgctgccgagaccggtagt
ggtaagagcacccaactacccaaaattcttttagaggcgggcatgggcaagcatgggaaa
attgcgtgtattcaacctagacgtatcgccaccacttccatcgccaaacgtattgcgtat
gagctcaaagaaaatcttgggcagagtgtaggctatcgtattcgctttgatgacaagagc
catccgcagacttttatccaagtgatgaccgacgggatgcttctctccgagatccatcac
gatcaccacctcttggagtacgatgccgtcattgtcgacgaggcacacgaacgtagcctc
aacatcgatctcctcttaggattactcaaaaagatccttgtacaccgccctcacttcaag
attctcatcgcatcggcaaccatcgacaccgagcgcttttcaacattttttcaccaagca
cctatcctcttagccaaaggccgccactacgtagtagaaattcgctaccaagaacccacc
cacaaagaagaagatatcttagagcaagccctgcgcgccttagagagcatcgcattggaa
tctaccagtgatgatgtcttgatctttttgcctacggaagattttattaaaaattttatc
gagctagcaaaaaaagcatccagcaaagaaaaacgcaccttcttaccgctctatgcgcgc
ctaagccagagcgaacagcaactcatctttgagcatgtcgaagggcgtaaggtcatcgtg
gctaccaacattgccgagacctcgattacactgcctaatatccgttatgttatcgacgcg
ggactggcgcgtatcaaccaatactccgcccaatcacgtatccaaaacctccccattgtg
ccgatcagtcaggcctctgccaaccagcgcgccggacgttgtggtcgtgtaagtaacggt
atttgtattcggctctacagcgaagaggattttcatagtcgtgcgccccacaccgaaccc
gaaatcaaacgggctaatcttgccgaaaccatcttgcgtatgatggcgatgcacatcaaa
gaacccgaagcattcgaatttatcgatcaaccgcaacagcgtctctttaacgagggcttt
aaaaccctatttgaacttcaagcgattccgtcccttaaaaaatcgcaacgcaaattgact
ccccttgggcgtgccatgagccatctccccctcgatccgcgcctagcgcgcatgctcatc
gccgccgatgaagagggcgcgctagaagaagttaccatcatcgccgccgccctctcggtg
atggatctgcgtagtgtccccgaagataaacgtgaggtagctaaagccatccaccaaaca
ttccatcagagtgctagcgatctcctgtggtaccttcaattatacgataaagccattgaa
cgtaaagtgataagccagaatcaactcaaacgcttctgccaagaacagtacctgcatccc
atgcgcgtcaatgagtggctctcgctcaccgagcagatccgaaacctcatgcaagaacgt
ggctacaagccctcggctgtgggcaaagagcgcccttggcaaggcgccaccaaagagaga
ttccccatcgggtatattgcaatccatcgagctatcttaacgggttacttgagtcaaatc
ggtgtctatcaacctgctgaggagaagcaaacctacaagaaaaatcaaaaggatcgccct
aaaaaacaagcgcactaccttgatatgcgcatgcaagaattctctctcttcccgacaagc
tccctgcttagtcaaggctggcaatgggtctttgccaccaagatgtggcgaacctcgcgc
ctctttgcccgcgaagttgccagcatcgatccccaatggctggaggatcttgccaagcac
ctcatccaaaagcgcgcaagcttacctgtctatagcgagaagagccaagaggttgtctgc
accgagacccactacctctactcctaccctatcgcgcaatacccgaatcgaagctatctt
gcctacaatccagaacaggcaacgctcctatttgttacccaagcgctcacccagcccgaa
atgattaccacgctcttagaggaagagctatttgcctttttacgccacaatgtcgcactt
caagagagccttgccactagccaagccaagcttcgccgagagaccattcttctggataaa
gaggcaattgtgcaattttatctgcctaaaatgaagggcattgctagcgtcgtggcgcta
cgcaaaaagcttcaacaagatttagcgtgggaggcgagtctctacctcaaagagagcgat
ttggcgatcgatcccgatctccttgccgaactccaagcctatcccagccaagtgatcgta
gaggagcaggcgatcgtcatggagtatcgctttgcccccaaccagcccaccgatggcgtt
actgcgatcctcacccccaagcaagtcgcggagcttaccgatatggatgccctcctttgg
caaccaatgggtctctttgtggagaaaatcaccgcgatgatcaaagcactccccaagccc
tcacgcatcaaactccaccccaccgcgcagagcgtaaagaccatccaccaatcgatgcct
aaaaatggcaatctctttacccagcttcaacatttttgtcaagaagccttccatgtgcag
atctccaaagagctttggcaagaggcttatggcaagatagaagatcgtctcaagatgcat
tatgctgtgcgccacactcccaacgaagaggacgatctcgctcgcgcagaagagctgggc
agtttaaaaaaactctccttttctcaagctaaagcccaagatttcgcgcaacttgccaag
cgctggcatcaagagaatttgcaaacctggccgacccatcaccccaccatcccacccgtg
attgccgtaaccaacagcgcgggcgaggtctacggacaagcctatccagcgctcttttat
catgataacaccgagcaaatctctcttaagctctttgaggatcgtccaagtgccgagaat
gcgcaccttgccggcatcgaagcgctcgtgctaaagctcctaaaaagtgaactatctgcc
ctaaagaagaattttcagctcaaagaacgccacccccacttgggctattgggcgagttac
aaagaggcaaatcgtctctttgagaactacacgcgcatgcaatacgttcgtctaggtgcg
attcgcacccaacaagcctttgaggcgcttgatagcgcaactgcccgtcaagcgctctgg
caagatgtggcacaagattttaccgcctttaccacctcgttggagctataccatgaggca
agagagaagctttctcgcgccaagagcaaaggcaattccctacctgatctggagagatta
gaacaaaatcttgcatttttagccggaaagtccgcttggttgtggatgtcgcaagccaaa
gtgcgtcggctaccccagctcctcaaaatttggcatctaagattcgatcgtgccctcgca
aacctacccaaagatcgcgaaaaagccctgcccttcgccccctatcaccaaaaaattcat
cactatagcacgattaatcctagccacatccaaatcgaactcctcaagcaactaagccac
attctctacgaagtggagctcaaacagctcctgcccgagagcaaaaatttgcttttttca
aaaaaagagctcgaagaaattgcaattatgttgtaa
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