Entomospira culicis: PVA46_07260
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Entry
PVA46_07260 CDS
T08829
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ecul
Entomospira culicis
Pathway
ecul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVA46_07260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecul03021
]
PVA46_07260 (rpoC)
03400 DNA repair and recombination proteins [BR:
ecul03400
]
PVA46_07260 (rpoC)
Enzymes [BR:
ecul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVA46_07260 (rpoC)
Transcription machinery [BR:
ecul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVA46_07260 (rpoC)
DNA repair and recombination proteins [BR:
ecul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVA46_07260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WDI37111
LinkDB
All DBs
Position
complement(1532324..1536649)
Genome browser
AA seq
1441 aa
AA seq
DB search
MKEMAEFDSIRISLASPDQIKAWSYGEVKKPETINYRTLKPEKEGLFCERIFGTTKEWEC
FCGKFKSIRYKGVVCDRCGVEVTHFKVRRERIGHIELASPVSHIWYYRSVPSRMGLLLDL
SMSALRSVLYFEKYIVVDAGDTDLKKMQLLTEEEYSSAKERFGLSFTAGIGAEVIRTLLE
QIDLYELASSLRAEMIEKGAKSDKRLLKRLELVEDFRDSGNRPEWMILDVVPVLPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLITLKAPDIIIRNEKRMLQEAVDALFDNGK
KKKAVKGSGNRQLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPNK
MAMELFKPFIMKKLIDRDFVSNIKKAKILVEQEAPEVWNVLDEVVKEHPVLLNRAPTLHR
LGMQAFEPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLTQAAQIECWTLMMSTNNLL
NPSNGQPVVYPRQDMILGIYYLTKNYLEKEGEKLRYFSGEDEVLMAAERGVLDYHQLCFV
RLNNEWVKTTPGRMIFNQNMPDEVPFVNETLGDKQVRRLIAQVYAEHGSYTAVQMLDAIK
NTGYRYATFFGASISMNDILVPEEKKSMVEAANKEIVRISEQYKKGHITDEERYQRAIQT
WSNANDQLTDLMMKKLEVAKGGFNSVYMMADSGARGSRNQIRQLAAMRGLMNKPNGHIIE
LPIRSNFKEGLSVIEYFISSNGARKGLSDTALKTAEAGYLTRRLVDIAQDVVINEEDCGT
INGLVLAAVKDGEEVIESLSSRLAGRFSLERLAHPVTGDVLIDIGEEITEEGALVIEDLG
FDSVKVRSVLACESKYGVCQKCYGRDLARGHLVNVGEAVGTIAAQSIGEPGTQLTMRTFY
TGGAASTASEDNKVSFKYDVYIEKIQGNYIELEGSKLLFTRRGSLTLRQVLQSEQIAKDD
KLVGDFPRRVVKDEVLMVKAGGKKIHASALGYIDYHGKHIYLMANEQNITIRNGSEVVVK
VGQMIPAGEALASFDAFSDPIIAEQSGYMRFVEIELGRTLREETNEDTGATERKITDLSN
ESAQPRIEILSDHGDVLGVYYLPGHAYLANETQDGAFVEAGTRLARMLKESQKSMDITSG
LPRVSELFEARRPRNAAVLSLISGKVHFRGVTKGKRTIVVEDPFGKEFKHQVPMSRYLLV
REGDMVEAGEPLCDGATDPHDILQILGEQALQQFLLREVQAVYRMQGVQIHDKHVGIVIR
QMMRKMEIVQIGDTGFIYGQQVDKYDFHHENARVHADGGEVAIARPLLLGVTRASLNIGS
FISAASFQETTRVLTNAAIAGEVDNLKGLKENVIIGHLIPAGTGMKRYRKMKLSNQEYTD
LDDLVQETKENRRLEQELARQRMNEELAEDEVEVESAELDEVYTYENGGDFGMSEIDLDD
E
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagatggcagagtttgatagtattcgtattagtttggcaagtcctgatcagatt
aaggcatggagctatggcgaggtaaagaagccagagacgattaattaccgcacgctaaag
ccagaaaaagaggggctcttttgtgagcgtatctttggtactacgaaggagtgggagtgc
ttttgtggtaagtttaaatcgatacgctataagggtgtggtctgcgatcgttgtggggtt
gaggttacgcattttaaggtgcgccgtgagcgtattggacatattgaacttgcctcgccg
gtgagccacatttggtactatcgtagtgtgcctagccgtatgggattactcttagatctc
tcgatgtcggcattacgttcggtgctctactttgagaagtatattgtggtggacgcgggc
gatacggatcttaaaaagatgcaattgctcaccgaagaggagtactccagcgccaaagag
cgctttggcttgagctttaccgcgggtattggtgcggaggtgattcgcacccttttggag
cagattgatctgtatgagttagcctcatctttgcgtgccgagatgatcgagaagggagct
aagagtgataagcgccttttaaagcgcttggagctggtagaagactttcgcgattcgggc
aaccgaccggagtggatgatccttgatgttgtgccggtcttgccaccagaactacgtccg
atggtacagcttgatggtgggcgttttgccacctctgacttaaatgatctctatcgccgt
gtgattaaccgaaacaaccgcctcaagcgtttgattacgctaaaggcccctgatattatt
atccgtaacgaaaagcgtatgcttcaagaggcggttgatgcactctttgataatggtaaa
aagaagaaggcggtgaaggggtcgggcaaccgtcagcttaaatcgttaagtgatatgctc
aagggtaagagtggtcgtttccgccagaacttgttgggtaagcgtgttgactactcgggg
cgttcggttatcgtggttgggccaaacctcaagcttcatcagtgtggtttgcctaataag
atggcgatggagctctttaagccttttattatgaaaaagcttatcgacagagattttgta
agcaatattaaaaaagcaaaaattttggtggagcaagaagcgcctgaggtttggaatgtc
ttggacgaagtagttaaagagcatcctgtcctcttaaaccgcgcgccgaccctgcaccgt
ttgggtatgcaggcgtttgagccagtgctggtagaaggcaaggcgattcgtctgcatccg
ctggtttgtaccgcgtttaatgccgactttgatggtgatcagatggcggtgcacgtgcca
ttgacgcaggcggcacagattgagtgttggacgttgatgatgtcgacgaacaacttgctc
aacccatcaaatggtcaaccggtggtctacccacgtcaggatatgattttgggtatctat
taccttaccaagaactaccttgagaaagagggcgaaaagctccgctacttctcgggtgag
gatgaggtcttaatggctgccgagcgtggggtattggattatcatcagctctgctttgtt
cgcctgaataatgagtgggtcaagacgaccccagggcgcatgatttttaaccaaaatatg
cccgatgaagtgccctttgtcaacgagacactgggcgataagcaggtgcgtcgtttgatt
gcgcaagtctatgccgaacatggttcgtataccgcggtgcagatgttagatgccattaag
aatacgggatatcgttatgcaaccttctttggtgcctctatctcgatgaatgatattctt
gtgccagaagagaagaagagcatggtggaggccgccaacaaagagattgtgcgtatctct
gaacagtataagaagggccatattaccgatgaagagcgctaccaacgcgcgattcagacg
tggtcgaatgctaacgatcagcttacggatttgatgatgaagaagctggaggttgctaag
ggtggatttaatagcgtctatatgatggcagactcaggtgcgcgtggatcgcgtaaccag
attcgtcagttggcggcgatgcgtggtttgatgaacaaacccaatggacatattattgag
ttgccgattcgttctaactttaaagagggtctctcggttatcgagtactttatttcgagt
aacggtgcgcgaaaaggtctctcggatacggcgctcaagacggccgaagctggatatttg
acccgtcgtttggtggacattgcccaagacgtggtgatcaacgaagaggattgtggtacg
atcaatggcttggtcttggctgcggttaaggatggagaagaggttattgaatcgctctct
agccgtctggcggggcgcttctctttggagcgtttggcgcatccagttacaggcgatgtc
ttgatagatattggtgaggagattaccgaagagggcgctctggtgattgaggatcttggc
tttgattcggttaaggtgcgttcggtcttagcgtgtgagtcgaagtatggggtctgtcag
aagtgttatggacgcgatcttgcgcgtgggcacttggtcaacgtgggcgaagccgtcggt
acgatcgctgcccagtcgattggtgaaccgggtacccagctaaccatgcgtactttctat
accggcggtgcggcgagcacggcgagtgaagataataaggtaagctttaagtacgatgtc
tatatcgagaagattcagggtaattacattgagcttgagggttctaagctcctcttcacg
cgacgtggatcgttgacattgcgtcaggtattgcagagcgaacaaatcgctaaagacgat
aagctcgtgggagattttcctcgtcgggtggttaaagacgaggtgcttatggtgaaggct
ggtggtaagaagatccatgcctcggcgctggggtatattgactatcatggtaagcatatc
tatttgatggccaatgagcagaatatcaccatccgtaacggatcagaagtggtggtaaag
gtggggcagatgatccctgccggtgaggctttggcaagctttgacgccttctctgacccc
attattgccgagcaaagcggatatatgcgctttgtggagattgagttggggcgtacgttg
cgcgaagagaccaatgaagataccggtgctaccgagcgtaaaatcaccgatctctccaat
gagtctgcgcagcctcgcatcgagattttgagcgatcatggcgatgttttgggtgtctac
tacttaccgggacacgcctatcttgcgaatgagacacaagatggtgcatttgtggaggcg
ggaacgcgtctggcgcgtatgcttaaagagagtcagaagtcgatggacattaccagcggt
ctgcctcgggttagcgagctctttgaggcgcgtcgtccgcgcaatgccgctgtcttgagt
ttgatctcgggtaaggtgcactttagaggcgtaaccaagggcaagcgtaccattgtggtg
gaagatccctttggcaaagaatttaagcaccaagtgccgatgagtcgctacttactcgtg
cgtgaaggtgatatggtagaggcgggggagccactgtgtgatggcgcgaccgatccgcat
gatatcttgcagattttgggcgaacaagcgcttcagcaatttttgttgcgtgaggtacag
gcggtctatcgcatgcagggtgtgcagattcatgataagcacgtgggtattgtcatccgt
cagatgatgcgtaagatggagattgttcagattggcgacacgggctttatctatggccag
caggtggataagtacgactttcaccatgagaatgcgcgggtgcatgccgatggtggagag
gtggcgattgcgcgtccactcttgttgggtgttacacgtgcaagcttgaatattggtagc
tttatctcggcggcctccttccaagagacaacgcgggtacttaccaacgctgccattgcc
ggcgaggtggataatcttaagggtctcaaggagaatgtcatcattggacaccttatccct
gctggaacggggatgaagcgctatcgcaagatgaagctctcgaatcaggagtatactgac
ttggatgacttggtgcaagagacgaaagagaatcgtcgtctggagcaagagttggcgcgt
caacgtatgaacgaagagcttgccgaagatgaggtcgaagtggagagcgccgagcttgac
gaggtttacacctacgaaaatggtggcgactttggcatgagcgaaattgatctagacgat
gagtag
DBGET
integrated database retrieval system
