Escherichia coli APEC O1 (APEC): APECO1_114
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Entry
APECO1_114 CDS
T00425
Symbol
ycdR
Name
(GenBank) predicted enzyme associated with biofilm formation
KO
K11931
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]
Organism
ecv
Escherichia coli APEC O1 (APEC)
Pathway
ecv02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecv00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
APECO1_114 (ycdR)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GHL13
Polysacc_deac_1
GHL10
Motif
Other DBs
NCBI-ProteinID:
ABJ00417
UniProt:
A0A0H2YXW7
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All DBs
Position
complement(1073410..1075428)
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AA seq
672 aa
AA seq
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MLRNGNKYILMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE
AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF
YTRVFPILQAFQWPAVWAPVGSWVDTPADEQVKFGDEMVDREYFATWQQVREVARSRLVE
VASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK
AKVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE
FAQQIITVQEKSPQRIMHIDLDYVYDENHQQMDRNIDVLIQRVKDMQISTVYLQAFADPD
GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT
GEKKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPA
ITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPHVITARNIF
ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYMEGVAEKSADQWLIQLTNQIKNIPQA
KDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGGKNYGYYPDNFLHNQPEIDVIR
PEFSTAWYPKND
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttacgtaatggaaataaatatatcctgatgctggtgagtataattatgctcactgcg
tgcattagccagtcaagaacatcatttataccgccacaggatcgcgaatctttactcgcc
gagcaaccgtggccgcataatggttttgtggcgatttcatggcataacgttgaagacgaa
gctgccgaccagcgttttatgtcagtgcggacatcagcactgcgtgaacaatttgcctgg
ctgcgcgagaacggttatcaaccggtcagtattgctcaaattcgtgaagcacatcgagga
ggaaaaccgctaccggaaaaagcagtagtgctgacttttgatgacggctaccagagtttt
tatacccgcgtcttcccaattcttcaggccttccagtggcctgctgtatgggcccccgtc
ggcagttgggtcgatacgccagcggatgaacaagtaaaatttggcgatgagatggtcgat
cgagaatattttgccacgtggcaacaagtgcgagaagttgcgcgttcccggctcgttgag
gtcgcttctcatacatggaattctcactacggtattcaggctaatgccaccggcagctta
ttgcctgtatatgtaaatcgtgcatattttactgaccacgcacggtatgaaaccgcagca
gaataccgggaaagaattcgtctggatgctgtaaaaatgacggaatacctgcgtacaaag
gctaaggtaaatccacacgtttttgtttggccttatggcgaagcgaatggcatagcgata
gaggaattaaaaaaactcggttatgacatgttcttcacccttgaatcaggtttggcaaat
gcgtcacaattggattccattccgcgagtattaatcgccaataatccctcattaaaagag
tttgcccagcaaattattaccgtacaggaaaaatcaccacaacggataatgcatatcgat
cttgattacgtttatgacgaaaaccaccagcaaatggatcgcaatattgatgtgctaatt
cagcgggtgaaagatatgcaaatatcaaccgtgtatttgcaggcatttgctgatcccgat
ggtgatgggctggtcaaagaggtctggtttccaaatcgtttgctaccaatgaaagcagat
atttttagtcgggttgcctggcaattacgtacccgctcaggtgtaaacatctatgcgtgg
atgccggtattaagctgggatttagatcccacattaacgcgagtaaaatacttaccgact
ggggagaaaaaagcacaaattcatcctgaacaatatcgccgtctctctcctttcgatgac
agagtcagagcacaagttggcatgttatatgaagatcttgccggacatgctgcttttgat
ggcatattgttccacgatgatgctttgctttcagattatgaagatgccagtgcaccggct
atcacggcttatcagcaagcaggctttagcgggagtctgagcgaaattcgacaaaacccg
gagcaatttaaacagtggacccgctttaaaagtcgtgcgttaactgacttcactttagaa
cttagtgcgcgcgtaaaagccattcgcggtccacatgttataactgcacgaaatattttt
gcacttccggtaatacaacctgaaagtgaagcgtggtttgcacagaattatgctgatttc
ctaaaaagctatgactggaccgctattatggctatgccttatatggaaggtgtcgcagaa
aaatcggctgaccaatggttaatacaattgaccaatcaaattaaaaacatccctcaggct
aaagacaaatctattttagaattacaggcacaaaactggcagaaaaatggtcagcatcag
gctatttcttcgcaacaactcgctcactggatgagcctattacaactgaatggagggaaa
aactatggttattatcccgacaattttctgcataaccaacctgaaatagacgttattcgt
cctgagttttcaacagcctggtatccgaaaaatgattaa
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