Escherichia coli APEC O1 (APEC): APECO1_1613
Help
Entry
APECO1_1613 CDS
T00425
Symbol
sbcC
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ecv
Escherichia coli APEC O1 (APEC)
Brite
KEGG Orthology (KO) [BR:
ecv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecv03400
]
APECO1_1613 (sbcC)
DNA repair and recombination proteins [BR:
ecv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
APECO1_1613 (sbcC)
Archaeal homologous recombinant proteins
APECO1_1613 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_15
ABC_tran
RsgA_GTPase
cobW
nSTAND3
AAA_21
NTPase_1
AAA_22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
ABI99856
UniProt:
A0A0H2YW86
LinkDB
All DBs
Position
complement(428457..431600)
Genome browser
AA seq
1047 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA
DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLITAQQ
QEQQSLNWLTRLDELQQEGSRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIA
EYSTALAHTRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNAWLQEHDRLRQ
WNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVASALAQHAE
QRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTLEQTQRNAALNEMRHRYKEKTQQLADV
KTICEQETRIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQARLLTLEKEVK
KLGEEGATLRGQLDALTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQP
WLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQE
DEEESWLATRQQEAQSWQHRQNELTALQNRIQQLTPILETLPQSDELPHSEETVALENWR
QVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLT
QLEQLKQNLENQRRQAQTLVTQTAETLTQHQQHRPGGLSLTVTVEQIQQELAQTHQKLRE
NTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQG
LTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK
ERIPVQIKVKKINGLGYSKLESAFAMK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagcctgcgcctgaaaaacctgaactcattaaaaggcgaatggaagatt
gatttcacccgcgagccgttcgccagcaacgggctgtttgctattaccggcccaaccggt
gcggggaaaaccaccctgctggacgccatttgtctggcgctgtatcacgaaaccccgcgc
ctctctaacgtttcacaatcgcaaaatgatctcatgacccgcgataccgccgaatgtctg
gcggaagtggagtttgaagtcaaaggtgaagcgtatcgcgcgttctggagccagaatcgg
gcgcgtaaccagccggacggtaatttgcaggtgccacgcgtagagctggcgcgctgtgca
gacggcaaaattctcgccgacaaagtgaaagataagctggaactgacggcgacgttaacc
ggactggattacgggcgcttcacccgttcgatgctgctttcgcaggggcaatttgctgcc
ttcctgaatgccaaacccaaagaacgcgcagaattgctcgaggagttaaccggcactgaa
atctacgggcaaatctcggcgatggtttttgagcagcacaaatcggcccgcacagagctg
gagaagctgcaagcgcaggccagcggcgtcgcgttgctcacgccagaacaagtgcaatcg
ctgacagcgagtttgcaggtacttactgacgaagaaaaacagttaattaccgcgcagcag
caagaacaacaatcgctaaactggttaacgcgtctggacgaattgcagcaagaaggcagc
cgccgtcaacaggccttgcaacaggcgttagccgaagaagaaaaagcgcaacctcaactg
gcggcgctcagtctggcacaaccggcacgaaatcttcgtccgcactgggaacgcatcgca
gaatacagcacggcgctggcgcatactcgccagcagattgaagaagtaaatactcgctta
cagagcacaatggcgcttcgtgcgagcattcgccaccacgcggcgaagcagtcagcagaa
ttacagcagcagcaacaaagcctgaatgcctggttacaggaacacgaccgcttacgtcag
tggaacaacgaactggcgggttggcgtgcgcagttctcccaacaaaccagcgatcgcgag
catctgcggcaatggcagcaacagttaactcatgctgagcaaaaacttaatgcacttgcg
gcgatcacgttgacgttaaccgccgatgaagttgctagcgccctggcgcaacatgctgag
caacgcccactgcgtcagcgcctggtcgcactgcatgggcagattgttccccaacaaaaa
cgtctggcgcagttacaggtcgctatccagaatgtcactctggaacagacgcaacgtaat
gccgcacttaacgaaatgcgccatcgttataaagaaaaaacgcaacaacttgccgatgtg
aaaaccatttgcgagcaggaaactcgcattaaaacgctggaagcccagcgcgcgcagtta
caagcgggtcagccttgtccactttgtggttccaccagccacccggcggtcgaggcgtat
caggcgctggaaccgggcgttaatcaggcccggctattaacgctggaaaaagaagtgaaa
aagctcggcgaagaaggtgcgacgctacgtgggcaactggacgccttaacaaagcaactt
cagcgtgatgaaaacgaagcgcaaagcctccgacaagatgagcaagcacttactcaacaa
tggcaagccgtcacggccagcctcaatatcaccttgcagccacaggacgatattcaaccg
tggctagatgcacaagatgagcacgaacgccagctgcggttactcagccaacggcatgaa
ttacaagggcagattgccgcgcataatcagcaaattatccagtatcaacagcaaattgaa
caacgccagcagcagctcttaacggcattggcgggttatgcactgacattgccacaggaa
gatgaagaagagagctggttggcgacgcgtcagcaagaagcgcagagctggcagcatcgc
cagaacgaattaaccgcgctgcaaaaccgtattcagcaactgacgccgattctggaaacg
ttgccgcaaagtgatgaactcccgcacagcgaagaaactgtggcgctggaaaactggcgg
caggttcatgaacaatgtctcgcattacacagccagcagcagacgttacagcaacaggat
gttctggcggcgcaaagtctgcaaaaagcccaggcgcagtttgacaccgcgctacaggcg
agcgtctttgacgatcagcaggcgttccttgcggcgctaatggatgaacaaacactaacg
cagctggaacagctcaagcagaatctggaaaaccagcgccgtcaggcgcaaacgctggtc
actcagacagcagaaacgctgacacagcatcagcaacaccgacctggcgggttgtctctc
actgtgacggtggagcagattcagcaagagttagcgcaaactcaccaaaagttgcgtgaa
aacaccacgagtcaaggcgagattcgccagcagctgaagcaggatgcagataaccgtcag
caacaacaaaccttaatgcagcaaattgctcaaatgacgcagcaggttgaggactgggga
tatctgaattcgctaataggttccaaagagggcgataaattccgcaagtttgcccaaggg
ctgacgctggataatttagtccatctcgctaatcagcaactcacccggctacacgggcgc
tatctgttacagcgcaaagccagcgaagcgctggaagttgaggttgttgatacctggcag
gctgatgcggtacgcgatacccgtaccctttccggcggcgaaagtttcctcgtcagtctg
gcgctggcactggcgctttcagatctggtcagccataaaacgcgtattgactcgctgttc
cttgatgaaggttttggcacactggatagcgaaacgctggataccgcccttgatgcgttg
gatgccctgaatgccagtggcaaaaccatcggggtgattagccacgttgaggcgatgaaa
gagcgtattccggtgcagatcaaagtgaagaagatcaatggactgggctacagcaaactg
gaaagtgcgtttgcaatgaaataa
DBGET
integrated database retrieval system
