Escherichia coli APEC O1 (APEC): APECO1_2213
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Entry
APECO1_2213 CDS
T00425
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ecv
Escherichia coli APEC O1 (APEC)
Pathway
ecv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APECO1_2213 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecv03019
]
APECO1_2213 (rnr)
03016 Transfer RNA biogenesis [BR:
ecv03016
]
APECO1_2213 (rnr)
Enzymes [BR:
ecv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APECO1_2213 (rnr)
Messenger RNA biogenesis [BR:
ecv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APECO1_2213 (rnr)
Transfer RNA biogenesis [BR:
ecv03016
]
Prokaryotic type
tRNA degradation factors
APECO1_2213 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABJ03724
UniProt:
A0A0H2Z6D6
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All DBs
Position
4814148..4816631
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AA seq
827 aa
AA seq
DB search
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHI
EGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV
PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI
ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP
QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV
ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNV
FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV
EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD
SAFRGEKKPKPKAAKKDARKAKKPSVKTQKIAAATKAKRAAKKKVAE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaaatcttcatcagagatgacaacggaggaaccgagatgtcacaagatcctttc
caggaacgcgaagctgaaaaatacgcgaatcccatccctagtcgggaatttatcctcgaa
catttaaccaaacgtgaaaaaccggccagccgtgatgagctggcggtagaactgcacatt
gaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgcgcgatggagcgcgatggt
caactggtcttcactcgccgtcagtgctatgcgctgccggaacgcctcgacctggtgaaa
ggtaccgttattggccaccgtgatggctacggctttctgcgagttgaagggcgtaaagat
gatttgtatctctccagcgagcagatgaaaacctgcattcatggcgatcaggtgctggct
cagccgctgggcgctgaccgtaaaggtcgtcgtgaagcgcgtattgtccgcgtactggtg
ccaaaaaccagccagattgttggtcgctacttcaccgaagcgggcgtcggctttgtggtt
cctgacgatagccgtctgagcttcgatatcttaatcccgcccgatcagatcatgggcgcg
cggatgggctttgtggtggtggttgaactgactcaacgcccgactcgccgtaccaaagcg
gtgggtaaaatcgtcgaagtgctgggcgacaatatgggcaccggcatggcggttgatatc
gctctgcgtacccatgaaattccgtacatctggccgcaggctgttgagcaacaggttgcc
gggctgaaagaagaagtgccggaagaagcaaaagtgggccgtgtcgatctgcgcgattta
ccgctggtcaccattgatggcgaagacgcccgtgactttgacgatgcagtttactgtgag
aaaaaacgcggcggcggctggcgtttatgggtcgcgattgccgacgtcagctactatgtg
cgtccgccaacgccgctggacagagaagcgcgtaatcgtggtacgtcggtgtacttccct
tcgcaggttatcccgatgctgccggaagtgctctctaacggcctgtgctcgctcaacccg
caggtagaccgcctgtgtatggtgtgcgagatgacggtttcgtcgaaaggccgcctgact
ggctacaaattctacgaagcggtgatgagttctcacgcgcgtctgacctacaccaaagtc
tggcatatactgcaaggcgatcaggatctgcgcgagcagtatgcgccgctggttaagcat
ctcgaagagttacataacctctataaagtgctggataaagcccgtgaagaacgcggtggg
atctcatttgagagcgaagaagcgaagttcattttcaacgctgaacgccgtattgaacgt
atcgaacagactcagcgtaacgacgcccacaagttaattgaagagtgcatgattctggcg
aatatctcggcggcgcgtttcgttgagaaagccaaagaaccggcactgttccgtattcac
gacaagccgagcaccgaagcgattacctctttccgttcagtgctggcggagctggggctg
gaactgccgggcggtaacaagccggaaccgcgcgactatgcagagttactggaatcggtt
gccgatcgtcctgatgcagaaatgctgcaaaccatgcttttgcgctcgatgaaacaggcg
atttacgatccggaaaaccgtggtcacttcggtctggcattgcagtcctatgcgcacttt
acttcgccgattcgtcgttatcctgacctgacgttgcaccgcgccattaaatatctgctg
gcgaaagagcaggggcatcagggcaacaccactgaaaccggcggctaccattattcgatg
gaagagatgctgcaactgggtcagcactgttcgatggcggaacgtcgtgccgatgaagca
acgcgcgatgtgtctgactggctgaagtgtgacttcatgctcgaccaggtaggtaacgtc
tttaaaggcgtaatttccagcgtcactggctttggcttcttcgtccgtctggacgacttg
ttcattgatggtctggtccatgtctcttcgctggacaatgactactatcgctttgatcag
gtagggcaacgcctgatgggtgaatccagcggccagacttatcgcctgggcgatcgcgtg
gaagttcgcgttgaagcggttaatatggacgagcgcaaaatcgactttagcctgatctcc
agcgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgagaaagcgaaaaaaggcgat
gcaggcaaaaaaggcggcaagcggcgtcaggtcggcaaaaaggtcaactttgagccagac
agcgcctttcgcggcgagaaaaaaccgaagccgaaagcagcgaagaaagacgcgagaaaa
gcgaaaaagccatcggtgaaaacgcagaaaatagccgcagcgaccaaagcgaagcgtgcg
gcgaagaaaaaagtggcagagtga
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