Escherichia coli APEC O1 (APEC): APECO1_3250
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Entry
APECO1_3250 CDS
T00425
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ecv
Escherichia coli APEC O1 (APEC)
Pathway
ecv00550
Peptidoglycan biosynthesis
ecv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
APECO1_3250 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecv01002
]
APECO1_3250 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ecv01011
]
APECO1_3250 (dacB)
Enzymes [BR:
ecv01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
APECO1_3250 (dacB)
Peptidases and inhibitors [BR:
ecv01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
APECO1_3250 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ecv01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
APECO1_3250 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
ABJ02675
UniProt:
A0A0H2Z426
LinkDB
All DBs
Position
3621693..3623126
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AA seq
477 aa
AA seq
DB search
MRFSRFIIGLTSCIAFSVQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALP
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLRRQDIRNMV
ATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSISLYS
APKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLS
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
LQGVYNLAGFITTVSGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgattttccagatttatcatcggattgaccagctgtatagcgttcagtgttcaggcc
gcaaatgttgatgagtacattactcaactccccgctggtgccaaccttgccctgatggtg
caaaaagtcggcgcgtcggcccccgctattgattaccacagtcagcagatggcgctgccc
gccagtacgcagaaagtgattactgcactggcggcgttgattcaactcggccccgatttt
cgttttaccacgacgcttgaaaccaaaggcaatgtggaaaacggcgtacttaagggtgac
ttagtggcgcgatttggtgccgatccgacgttaagacgtcaggatattcgcaatatggtc
gcgactttgaaaaaatctggcgtcaaccaaatcgatggcaatgtgttgatagatacctcc
attttcgccagccacgataaagcccccggctggccatggaatgacatgacacaatgcttt
agcgctccgcctgccgccgccatagttgaccgcaactgtttctccatctcgctctacagt
gccccaaaacctggtgatatggcttttatacgcgtggcatcttattaccccgttacgatg
ttcagccaggtacgcaccctcccccgtggttctgccgaagcgcaatattgcgagctggat
gtggtgccaggcgacctgaaccgctttacgctgaccggatgcctgccacaacgttctgag
ccgctcccgttggcttttgccgtgcaggatggagccagctatgccggtgcaattctgaaa
gatgagttaaaacaggcaggtatcacctggagcggaacactgctgcgtcagacgcaggtt
aacgaacccggaacggtagttgccagtaaacagtcggccccgctgcacgatctgcttaag
attatgctgaaaaagtcggacaacatgattgccgatacggttttccgcatgatcggccat
gcgcgcttcaatgtgcctggaacatggcgggcaggatcggacgccgtgcgtcagatcctg
cgccagcaagccggtgtcgatatcggaaacaccattattgccgatggttcagggctttcg
cggcataacctgattgcccccgccaccatgatgcaggtgctgcaatatattgcccaacac
gacaatgaacttaactttatctccatgctgccgctggcgggctatgacggctctttgcag
taccgtgcaggtctgcatcaggcgggcgtggatggaaaagtctcagcgaaaaccggttcg
ttgcagggggtatataacctggcgggattcattaccacagtgagcgggcaacgaatggcg
tttgtgcaatatctttctggctatgcagtagaaccggcggatcagcgtaatcgccgtatt
ccgttagtgcgttttgaaagccgtttgtataaagatatttatcagaataattag
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