Escherichia coli APEC O1 (APEC): APECO1_3268
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Entry
APECO1_3268 CDS
T00425
Symbol
deaD
Name
(GenBank) inducible ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecv
Escherichia coli APEC O1 (APEC)
Pathway
ecv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APECO1_3268 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecv03019
]
APECO1_3268 (deaD)
03009 Ribosome biogenesis [BR:
ecv03009
]
APECO1_3268 (deaD)
Enzymes [BR:
ecv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APECO1_3268 (deaD)
Messenger RNA biogenesis [BR:
ecv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APECO1_3268 (deaD)
Ribosome biogenesis [BR:
ecv03009
]
Prokaryotic type
rRNA helicases
APECO1_3268 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ABJ02657
UniProt:
A0A0H2Z3A1
LinkDB
All DBs
Position
complement(3598706..3600646)
Genome browser
AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG
RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctgctgaatggc
cgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattctctttacct
ctgctgcagaatcttgatcctgagctgaaagcaccacagattctggtgttggcaccgacc
cgcgaactggcggtacaggttgctgaggcaatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgcgccctgcgt
caggggccgcagattgttgtcggtactccgggccgtctgctggaccacctgaaacgtggc
actctggacctctctaaattgagcggtctggttctggatgaagctgacgaaatgctgcgc
atgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggcagaa
gctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaaccaggcgctg
cgtgagcagacactggaacgcctgaaagatggtcgtctggacatcctgattgcgaccgac
gttgcagcccgtggcctggacgttgagcgtatcagcctggtggttaactacgatatcccg
atggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcaggtcgtgctggt
cgtgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgcaacatcgaacgcacc
atgaagctgaccattccggaagtagaactgccgaacgcagaactgctgggcaaacgtcgt
ctggaaaaatttgccgctaaagtacagcagcagctggaaagcagcgatctggatcaatac
cgtgcactgctgagcaaaattcagccgactgccgaaggtgaagagctggatctcgaaact
ctggcagccgcactactgaaaatggcacagggtgaacgtactctgattgttccgccagat
gcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgt
aacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgtgaacgtcgtgatgtt
ggcgatatgcagctgtaccgtattgaagtgggccgcgatgatggtgttgaagttcgtcat
atcgttggcgcgattgctaacgaaggtgacatcagcagccgttacatcggtaacatcaag
ctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaa
cactttacgcgtactcgcattctcaacaagccgatgaacatgcagttgctgggcgatgca
cagccgcatactggtggtgagcgtcgtggcggtggtcgtggtttcggtggcgaacgtcgt
gaaggcggtcgtaacttcagcggtgaacgccgtgaagggggtcgtggtgatgggcgtcgt
tttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgactctaccggtcgtcgt
cgtttcggtggtgatgcgtaa
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