Escherichia coli O139 H28 E24377A (ETEC): EcE24377A_0061
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Entry
EcE24377A_0061 CDS
T00590
Symbol
rapA
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ecw
Escherichia coli O139:H28 E24377A (ETEC)
Brite
KEGG Orthology (KO) [BR:
ecw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecw03021
]
EcE24377A_0061 (rapA)
Transcription machinery [BR:
ecw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
EcE24377A_0061 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABV19351
UniProt:
A7ZHF0
LinkDB
All DBs
Position
complement(62164..65070)
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AA seq
968 aa
AA seq
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MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT
EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQIMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtacgcacgcagtgattcccccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggatactgaagagtccggcgtagccctgcgtgaagtt
ttccttgatagcaaactggtgttcagcaaaccgcaggaccgtctgtttgccgggcagatt
gaccgtatggaccgctttgcgctgcgttatcgcgcgcgtaagtattccagcgaacagttc
cgtatgccgtacagcggcctgcgcggtcagcgtaccagtctgattccgcatcagctcaac
atcgctcatgatgttggtcgccgccacgcgccgcgcgtcctgctggctgacgaagtgggt
ttagggaaaaccattgaagccgggatgatcctgcatcagcaactgctctctggcgctgct
gaacgtgtgctgattatcgtcccggaaaccttacagcatcagtggctggtagaaatgctg
cgccgtttcaacctgcgctttgcactgtttgatgatgagcgttatgccgaagctcagcac
gatgcttacaacccgtttgacaccgaacagctggtgatttgctcgctggattttgcccgt
cgtagcaaacagcgcctggaacatctctgtgaagccgaatgggacctgctggtggtcgat
gaagcgcatcacctggtgtggagcgaagatgcgccaagccgtgaatatcaggccattgaa
caactggcagagcacgtgccgggcgttctgctgctgaccgcgaccccggaacagctgggg
atggaaagccacttcgcccgtctgcgtctgctggacccgaaccgtttccacgattttgcg
cagttcgttgaagagcagaaaaattatcgtccggttgcggacgccgttgccatgctgctg
gcaggtaacaaactgagcaatgacgaactgaacatgcttggcgagatgatcggcgagcag
gatatcgagccgctgttgcaagcagcaaacagcgacagcgaagatgcccagagcgcccgt
caggaactggtttcgatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acgcgtaacggtgtgaaaggattcccgaaacgcgagctgcacaccattaaactgccgcta
ccgacgcagtatcagacggctattaaagtctccggcattatgggcgcacgtaaaagtgcg
gaagatcgtgctcgcgatatgctctacccggagcgtatttatcaggaatttgaaggtgat
aacgccacctggtggaacttcgatccgcgcgttgagtggctgatgggctacctgaccagc
catcgctctcagaaagtgctggtgatctgcgccaaagctgccactgcgctgcaactggag
caggtactgcgcgaacgtgaaggtattcgcgctgcggtgttccacgaaggtatgtcgatt
atcgaacgtgaccgcgctgccgcctggtttgccgaagaagacaccggcgcacaggtactg
ctgtgctcagaaatcggttctgaaggacgtaacttccagttcgccagccacatggtgatg
tttgacctgccattcaacccggatctactggagcagcgtattggtcgtctggatcgtatc
ggccaggcgcacgatattcagatccatgtgccttatctggagaaaaccgctcagtcggtg
ctggtgcgctggtatcacgaaggtctggatgcatttgagcacacctgcccgactggacgc
actatttacgatagcgtatacaacgatctgattaactatctggcttcaccggatcaaacc
gaaggctttgacgatctgatcaaaaactgccgcgagcaacatgaagcgctgaaagcacag
ctggaacagggtcgtgaccgcctgctggaaatccactccaacggtggcgaaaaagcccag
gcactggcagaaagcattgaagagcaggatgacgataccaacctgatcgccttcgccatg
aacctgttcgatattatcggtatcaatcaggacgatcgcggcgacaacatgatcgtgctg
acgccgtccgatcatatgctggtgccggacttccctggcctgtcggaagatggcatcacc
atcacctttgatcgtgaagtggcactggcgcgtgaagatgcacagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctttctggcgataccggtagcagcacg
atttcactgttaaaaaacaaagcgttgccggtaggtacgctgttggtggaactgatttat
gtggttgaagcccaggcgccgaagcagttgcagctcaaccgcttcctgccaccgacgccg
gtacgtatgctgctggataaaaacggcaacaacctggcggcgcaggtagagtttgaaacc
tttaaccgccagcttaacgcggttaaccgtcacaccggcagcaaactggttaacgccgtg
cagcaggatgttcacgctatccttcaactgggtgaagcgcagatcgagaaatctgcccgt
gcattgattgatgcagcgcgtaacgaagccgacgaaaaactgtctgccgagctgtctcgt
ctggaagctctgcgtgcagtgaacccgaacattcgtgacgacgaactgaccgccattgag
agcaaccgtcagcagataatggaaagcctggatcaggcaggttggcgtctggatgccctg
cgtttgatcgttgtgacgcatcagtaa
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