Escherichia coli O139 H28 E24377A (ETEC): EcE24377A_0152
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Entry
EcE24377A_0152 CDS
T00590
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ecw
Escherichia coli O139:H28 E24377A (ETEC)
Brite
KEGG Orthology (KO) [BR:
ecw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecw03019
]
EcE24377A_0152 (hrpB)
Enzymes [BR:
ecw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EcE24377A_0152 (hrpB)
Messenger RNA biogenesis [BR:
ecw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EcE24377A_0152 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABV17988
UniProt:
A7ZHN9
LinkDB
All DBs
Position
163571..166000
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AA seq
809 aa
AA seq
DB search
MSSLPVAAVLSELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA
ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS
FPVERHYLPLPAHQRFDEAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV
LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP
RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL
LMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL
AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG
GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG
SASPDARILLALPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL
AKPSEDELHQAMLNGIREKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAT
LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcgttgcccgttgctgccgtcttatctgaattacttaccgctctcgattgtgcg
ccgcaggtattattaagtgcgccgaccggggccgggaaatcaacctggctgccgctgcaa
ctgctggcgcatcccggcattaacgggaaaattatcctgctggagccgcgtcgtctggcg
gcgcgtaacgtcgcgcaacgactggcggagctgcttaacgaaaagccaggcgataccgtt
ggctaccggatgcgtgcgcaaaactgcgtcgggccgaatacccgcctggaagtggttacc
gaaggcgtgctgacgcgcatgatccagcgtgacccggaactgagcggtgttggattggtg
atcctcgatgaatttcatgagcgcagcttgcaggcggatttggcgttggcgctgttactc
gatgtgcaacaaggtctgcgtgatgaccttaaactgctgattatgtcggctacgctggat
aacgaccgcttgcagcaaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcg
tttccggttgaacgccattatttaccgctgcccgcgcatcagcgttttgacgaagccgtt
gcggtagccaccgccgaaatgctgcgtcaggaaagcggatcattactgttatttttacct
ggcgtcggagaaattcagcgtgtgcaggaacaactggcttcgcgcatcggcagtgatgtg
ttgctctgcccgctgtatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccg
gcaccgcaagggatgcgcaaagtggtgctggcgaccaatattgctgaaaccagtttaacc
attgaaggtattcgtctggtggtggattgtgcccaggagcgtgtggcgcgttttgatccg
cgcacggggcttacgcgactgattactcaacgcgttagccaggcatccatgacgcagcgt
gccgggcgcgccgggcgtctggagccgggtatcagcctgcatttaatcgccaaagaacaa
gcagaacgcgccgcggcgcaaagtgaaccggagatcttacaaagcgatctttccggtttg
ctgatggaattactgcaatggggatgcagcgatccggcgcagatgagctggctggatcaa
ccgccaacggtgaatctactggccgcgaaacgcctgttacaaatgctgggggcgctggag
ggtgaacggcttagtgcgcaggggcaaaaaatggcagcgctgggtaacgatccgcgttta
gcggcaatgctggttagcgcgaagaacgacgacgaagctgctaccgcggcaaaaattgcc
gccattctcgaagagccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgc
aatcaaccagcctggcagcaacgtagtcagcaactgttaaaacgcttaaacgtacgtggc
ggtgaggcagacagttcgcttatcgcgccgctacttgccggggcgtttgccgatcgcatt
gctcgtcgccgtgggcaagatggacgctatcaactggcaaacggcatgggagcgatgctc
gatgccaacgacgcgctaagccgccacgaatggttgatcgcaccgttattattgcagggc
agcgcctcgccggatgcgcggattttactggcgttaccggtcgatattgatgaattagta
caacgctgtccgcagctggtgcagcaatctgacaccgtggaatgggatgacgcgcaaggt
acgctgaaagcctggcgtcggctgcaaatcggtcagttgacggtgaaagtgcagccactg
gcgaaaccgtcagaagacgagttgcatcaggcgatgcttaacggcattcgtgaaaaaggt
ttaagcgtgctcaactggacggcggaagcggaacagctacgcttgcgtttgttatgcgcc
gcaaagtggttgccggaatatgactggccagcggttgatgatgaaagtttattggcgacg
ctggaaacgtggctgctgccacatatgactggcgtacattcactacgcggcctgaaatca
ctcgacatttatcaggcactacgcggattacttgattggggaatgcagcaacgtctggat
agtgaattgcctgcgcattacactgtgccgacgggaagccggatcgccattcgttatcat
gaagataacccgcccgcgctggcggtgagaatgcaagagatgtttggcgaggccaccaat
ccgacgatcgcccaggggcgcgtgccgctggtgctggagttgctttcacctgcccaaagg
ccattacaaatcacacgagatttgagcgccttctggaaaggagcgtaccgtgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgacccggcaaatactgca
ccgacgcgacggacgaaaaagtattcgtaa
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