Escherichia coli O9 HS (commensal): EcHS_A3354
Help
Entry
EcHS_A3354 CDS
T00591
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecx
Escherichia coli O9 HS (commensal)
Pathway
ecx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EcHS_A3354 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecx03019
]
EcHS_A3354 (deaD)
03009 Ribosome biogenesis [BR:
ecx03009
]
EcHS_A3354 (deaD)
Enzymes [BR:
ecx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EcHS_A3354 (deaD)
Messenger RNA biogenesis [BR:
ecx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EcHS_A3354 (deaD)
Ribosome biogenesis [BR:
ecx03009
]
Prokaryotic type
rRNA helicases
EcHS_A3354 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ABV07582
LinkDB
All DBs
Position
complement(3356897..3358852)
Genome browser
AA seq
651 aa
AA seq
DB search
MLINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIP
HLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFS
KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA
DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR
AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS
DLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR
GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY
IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGF
GGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
ttgctgatcaatttcatgatgagttatgtagactggccgccattaattttgaggcacacg
tactacatggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatcctt
gaagcccttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattcca
catctgctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgca
gcattctctttacctctgctgcagaatcttgatcctgagctgaaagcaccacagattctg
gtgctggcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctct
aaacacatgcgcggcgtaaatgtggttgccctgtacggcggccagcgttatgacgtgcaa
ttacgcgccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggac
cacctgaaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagct
gacgaaatgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccg
gaaggtcatcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacc
cgccgctttatgaaagagccgcaggaagtgcgtattcagtccagcgtgactacccgtcct
gacatcagccagagctactggactgtgtggggtatgcgtaaaaacgaagcactggtacgt
ttcctggaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgact
ctggaagtggctgaagctcttgagcgtaacggctacaatagcgccgcgctgaacggtgac
atgaaccaggcgctgcgtgagcagacactggaacgccttaaagacggtcgtctggacatc
ctgattgcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggtt
aactacgatatccctatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgt
gcgggtcgtgctggccgcgcgctgttgttcgttgagaaccgcgagcgtcgtctgctgcgc
aacattgaacgtactatgaagctgactattccggaagtagaactgccgaacgcagaactg
ctgggcaaacgccgtctggaaaaattcgccgctaaagtacagcagcagctggaaagcagc
gatctggatcaataccgcgcactgctgagcaaaattcagccgactgcagaaggtgaagag
ctggacctcgaaactctggccgccgcactgctgaaaatggcacagggtgaacgtactctg
atcgtaccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgt
ggtccgcgcgatcgtaacgaccgtggcccgcgtggtgaccgtgaagatcgtccgcgtcgt
gaacgtcgtgatgttggcgatatgcagctgtaccgcattgaagtgggccgcgatgatggt
gttgaagttcgtcatatcgttggtgcgattgctaacgaaggcgacatcagcagccgttac
attggtaacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccg
ggtgaagtgctgcaacactttacgcgcactcgcattctcaacaagccgatgaacatgcag
ttactgggcgatgcacagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttc
ggtggcgaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaaggtggtcgt
ggtgatggtcgtcgttttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgac
tctaccggtcgtcgtcgtttcggtggcgatgcgtaa
DBGET
integrated database retrieval system
