Escherichia coli O9 HS (commensal): EcHS_A3619
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Entry
EcHS_A3619 CDS
T00591
Symbol
rtcR
Name
(GenBank) sigma-54 dependent transcriptional regulator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
ecx
Escherichia coli O9 HS (commensal)
Brite
KEGG Orthology (KO) [BR:
ecx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecx03000
]
EcHS_A3619 (rtcR)
Transcription factors [BR:
ecx03000
]
Prokaryotic type
Other transcription factors
Others
EcHS_A3619 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
NACHT
AAA_22
AAA_30
AAA_7
AAA_33
AAA_19
AAA_2
AAA_14
T2SSE
ATPase_2
ResIII
TsaE
NPHP3_N
MCM
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ABV07834
UniProt:
A0A7I6H7D6
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All DBs
Position
3602543..3604135
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AA seq
530 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWLPTLCLCQQESLVIDRLELLHDARSLFETLKRD
IASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQIC
WFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLDFL
KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSGAF
VEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAML
LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR
QRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM
ATFATSGRITLDVVEDEINRLRYNWQESRPSALTQLLGAEAENIDLFDRMQLEHVIAICR
QAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEALQDQHSSS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggtaccgtgctggattatgccgggcgcggc
agtcagcgctggtcgaaatggcttccgacactctgtttatgccagcaagaatcgttggtc
atcgatcgactggaattattgcatgacgcccgctcgctatttgaaacgcttaaacgcgat
atcgccagcgtttcgccagaaacagaagtggtgagcgttgagattgaactgcataacccg
tgggatttcgaagaggtttacgcttgcctgcatgatttcgcccgtggttacgagtttcag
ccagaaaaagaagactatttaattcacattaccaccggcacccacgtcgcgcagatttgc
tggtttctgctggcggaagcgcgttacctgcccgcccggctgatacaatcttcacctccg
cgcaaaaaagaacagccgcgcggcgcaggtgaagtgacgattatcgatctcgatttaagc
cgttataacgccatcgccagccgctttgccgaggaacgccagcaaacgcttgattttctt
aagtccggcattgccacgcgtaacccccacttcaaccgcatgattgagcagatcgaaaaa
gtggcgatcaaatcccgcgcgccgattctgcttaacggtccaaccggcgcgggcaagtca
tttctggcgcgacgcatcttcgagttaaaacaggcgcggcatcagtttagcggcgcgttt
gtggaagtgaactgcgccaccctgcgcggcgataccgccatgtcgacgctgtttggtcat
gtaaaaggcgcgtttaccggggcgcgggaatctcgtgaaggtttattacgcagcgccaac
ggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaagcaatgctg
ctaaaagccattgaagagaaaaccttttacccgtttggcagcgatcgccaggtgagcagt
gattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaa
ttccgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccggggctacgc
cagcgccaggaagatattgaacctaacctggattatgaagtggagcgccacgcctcactc
accggcgacagcgtgcgttttaacaccgaagcgcggcgtgcctggctggcctttgcaaca
tctcctcaggcgacatggcgcggtaactttcgcgagctttctgccagcgtcacgcggatg
gcaacctttgccactagcggacgcatcactctggacgtggttgaagatgagataaaccgt
ctgcgctataactggcaggagagccgtccctccgcgcttacgcaactgctgggcgcagag
gcagaaaacatcgatctcttcgaccgtatgcaactggaacacgttatcgctatctgccgc
caggcaaagtcgctttctgctgccggacgacagctttttgatgtttcgcgccagggcaaa
gccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctgacctgg
gaagcattgcaggatcagcacagctccagttga
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