Escherichia coli O152 H28 SE11 (commensal): ECSE_1496
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Entry
ECSE_1496 CDS
T00784
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecy
Escherichia coli O152:H28 SE11 (commensal)
Brite
KEGG Orthology (KO) [BR:
ecy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecy03019
]
ECSE_1496
Enzymes [BR:
ecy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECSE_1496
Messenger RNA biogenesis [BR:
ecy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECSE_1496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BAG77020
UniProt:
A0A979GF15
LinkDB
All DBs
Position
1567955..1571800
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTALGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEENGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacagactgcgtttttctcggcgtctgcacggtgttaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggtt
agtcagaaaaagcaggacattctcgaagcaattcgtgatcaccaggtagtgatcgtcgcc
ggggaaacgggttctggtaaaacgactcagctgccgaaaatctgtatggagctggggcgc
gggattaaaggactgatcggccatacccagccgcgtcgcctggcggcaagaacggtggcg
aaccgtattgcagaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcg
cacgaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattattgaagtctccggtaggacctatccggtggaagtgcgc
tatcgcccgattgttgaagaagccgatgacaccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactaagccaggaaagccccggcgacattctgatctttatgagcggc
gagcgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaa
atcttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcac
agcggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggg
attaaatacgtcatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgc
tgtggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaa
caggccagcgcctataaactgacggcgctcggtcgccagctctctcagttgcctgtcgac
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtccgcgctctccattcaggatccgcgcgagcgtccgatggataaacagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagaatccgatttcctcgcgtttgta
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttctaacgccttccgtcga
ctgtgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggtcaacagcgaaccggcggaatat
cgcgaaattcacattgcgttgctgacgggtttgctttcccatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggt
ttattcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttg
attaaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcaccgtttacgggttgccgattgttgccgcgcgtaaggtcaactacagccag
atcgatccggcgttatgccgtgaactctttattcgccatgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctac
gaccagcgcatcagccacgatgtgatctctgcgcgccacttcgatagctggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggg
gcggaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagctatcagtttgagcccggcgcggatgctgacggtgtgactgtgcatatcccg
ctgccgttacttaaccaggttgaggagaatgggtttgaatggcagatccccggtctgcgc
cgcgaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgta
cccgcgccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttg
cttgacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaa
gtgcaggaaacgctgtctgcggtggcggatgacggtatcgagcagagcggcttacatatc
tggagttttggtcagctgccggaaagctacgaacagaagcgtggcaactacaaagtgaag
gcgtggccggcgctggtggatgaacgcgacagcgtggcgatcaaactgtttgataatccg
ctggaacaaaagcaggcaatgtggaacggtcttcgccgtctactgctactgaatattccc
tcgccaatcaagtatttacatgaaaagttaccgaacaaagccaagctgggtctgtacttt
aacccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaa
ctgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtccgcgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatc
ctcactgcggtgttcaatattaacaaacgtctgaaagggcgggtggatatgaccatggcg
ctggggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgttatttgcaggcgattgaaaaaagg
ctggaaaaactggcggttgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaa
gacgtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaa
cttggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagc
ggttaa
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integrated database retrieval system
