Escherichia coli O152 H28 SE11 (commensal): ECSE_3448
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Entry
ECSE_3448 CDS
T00784
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ecy
Escherichia coli O152:H28 SE11 (commensal)
Pathway
ecy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECSE_3448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecy03019
]
ECSE_3448
03009 Ribosome biogenesis [BR:
ecy03009
]
ECSE_3448
Enzymes [BR:
ecy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECSE_3448
Messenger RNA biogenesis [BR:
ecy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECSE_3448
Ribosome biogenesis [BR:
ecy03009
]
Prokaryotic type
rRNA helicases
ECSE_3448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
BAG78972
UniProt:
A0A979H3B3
LinkDB
All DBs
Position
complement(3576205..3578145)
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AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNG
RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctgctgaatggc
cgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattctctttacct
ctgctgcagaatcttgatcctgagctgaaagcaccacagattctggtgctggcaccgacc
cgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacacatgcgcggc
gtaaatgtggttgctctgtacggcggccagcgttatgacgtgcaattacgcgccctgcgt
caggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctgaaacgtggc
actctggacctctctaaactgagcggtctggttctggatgaagctgacgaaatgctgcgc
atgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggtatgcgcaaaaacgaagcactggtacgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggctgaa
gctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaaccaggcgctt
cgtgaacagacactggaacgcctgaaagatggtcgtctggacatcctgattgcgaccgac
gttgcagcccgtggcctggacgttgagcgtatcagcctggtagttaactacgatatcccg
atggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgctggc
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacattgaacgtact
atgaagctgactattccggaagtagaactgccgaacgcagaactgctgggcaaacgccgt
ctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctggatcaatac
cgcgcactgctgagcaaaattcagccgactgcagaaggtgaagagctggatctcgaaact
ctggctgcggcactgctgaaaatggcacagggtgaacgtactctgatcgtaccgccagat
gcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgt
aacgaccgtggcccgcgtggtgaccgtgaagatcgtccgcgtcgtgaacgtcgtgatgtt
ggcgatatgcagctgtaccgcattgaagtgggccgcgatgatggtgttgaagttcgtcat
atcgttggtgcgattgctaacgaaggcgacatcagcagccgttacattggtaacatcaag
ctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaa
cactttacgcgtactcgcattctcaacaagccgatgaacatgcagttactgggcgatgca
cagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggcgaacgtcgt
gaaggcggtcgtaacttcagtggtgaacgccgtgaaggtggccgtggtgatggtcgtcgt
tttagcggcgaacgtcgtgaaggccgcgctccgcgtcgtgatgactctaccggtcgtcgt
cgtttcggtggtgatgcgtaa
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